SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G33520 | AT | Annotation by Michelle Graham. TAIR10: actin-related protein 6 | chr3:14093791-14095476 REVERSE LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0006338 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin remodeling | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone acetylation | SoyBase | N/A | ISS |
| GO:0030029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0680 | KOG | Actin-related protein - Arp6p | JGI | ISS | |
| PTHR11937 | Panther | ACTIN | JGI | ISS | |
| PTHR11937:SF21 | Panther | ACTIN | JGI | ISS | |
| PF00022 | PFAM | Actin | JGI | ISS | |
| UniRef100_B6TWX2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Actin-like protein arp6 n=1 Tax=Zea mays RepID=B6TWX2_MAIZE | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JUI1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUI1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g07540 not represented in the dataset |
Glyma04g07540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g071500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g07540.1 sequence type=CDS gene model=Glyma04g07540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACCTCGACGAACGTGGTAGTCCTGGACAACGGCGGCGGGCTGATCAAGGCGGGCATCGGCGGCGAGCGCGACCCCTCCGCCATAGTCCCGAACTGCCTCTACCGCCCCCCGTCGTCGAAGAAGTGGCTCCACCTCCACTCCGGCGACGAGGACCTCACCTCCGCCGCCGTGCGCCGCCCCATGGACCGCGGCTACCTCATAAACCCCGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCTCTTCCGTCCTCCACATAAACCCTTCCCAGTCCTCGCTCCTCCTCACGGAGCCTCTCTTCACTCCCCCCTCCATCCAGCGCTCGGTGGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTGTACGTGGCCCACTCCCCCTCCCTCGTCCACCTCCACGAGGCCAGCCGCAACAACGCCAACGGGCTCCTCTCCAAGGCCCAGTGCAGCCTCGTCCTCGACGCCGGGTTCTCCTTCACCCACGCCTCCCCCGTCTTCCACAACTTCGCCCTCAACTACGCCGTCAAGAGGATCGACCTCGGCGGCAAGGCCCTCACCAACTACCTCAAGGAGCTCGTCTCCTTCCGCTCCGTTAATGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAACTCTGCTTTGTCTCACTCGACGTCAACCGCGACCTCACCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTACGTGCTTCCGGATGGTGTCACGTACACAAAGGGGTTTGTTAAGTATCCAGATCAGGCGCAGCGATATCTTGCATTGAGGGAGGGTGGCCTTCATTCTTCATCACCAGTGCAAGCGCAGGAGGATGTGAATTTCACGGAAATTGCCGAGCACCCAGAGAACAGGAAGAGAGTTGATTTGACAAAAAATGAATTTGACTTGACAAATGAACGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACGTGCTGTTAATGCGTGCCATCCACATCTCCGCCCTGTTCTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCCGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACGACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGTTCACTGTTGGCATCAAGTCCGGATTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA
>Glyma04g07540.1 sequence type=predicted peptide gene model=Glyma04g07540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTSTNVVVLDNGGGLIKAGIGGERDPSAIVPNCLYRPPSSKKWLHLHSGDEDLTSAAVRRPMDRGYLINPDLQREIWSHLFSSVLHINPSQSSLLLTEPLFTPPSIQRSVDELVFEDFNFRALYVAHSPSLVHLHEASRNNANGLLSKAQCSLVLDAGFSFTHASPVFHNFALNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVNRDLTIARKSGKENLFRCTYVLPDGVTYTKGFVKYPDQAQRYLALREGGLHSSSPVQAQEDVNFTEIAEHPENRKRVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLRPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYRVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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