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Report for Sequence Feature Glyma04g07540

Feature Type:gene_model
Chromosome:Gm04
Start:5883546
stop:5889524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G33520AT Annotation by Michelle Graham. TAIR10: actin-related protein 6 | chr3:14093791-14095476 REVERSE LENGTH=421 SoyBaseE_val: 0ISS
GO:0006338GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin remodeling SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016573GO-bp Annotation by Michelle Graham. GO Biological Process: histone acetylation SoyBaseN/AISS
GO:0030029GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0680 KOG Actin-related protein - Arp6p JGI ISS
PTHR11937Panther ACTIN JGI ISS
PTHR11937:SF21Panther ACTIN JGI ISS
PF00022PFAM Actin JGI ISS
UniRef100_B6TWX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Actin-like protein arp6 n=1 Tax=Zea mays RepID=B6TWX2_MAIZE SoyBaseE_val: 0ISS
UniRef100_I1JUI1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUI1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g07540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g071500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07540
>Glyma04g07540.1   sequence type=CDS   gene model=Glyma04g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACCTCGACGAACGTGGTAGTCCTGGACAACGGCGGCGGGCTGATCAAGGCGGGCATCGGCGGCGAGCGCGACCCCTCCGCCATAGTCCCGAACTGCCTCTACCGCCCCCCGTCGTCGAAGAAGTGGCTCCACCTCCACTCCGGCGACGAGGACCTCACCTCCGCCGCCGTGCGCCGCCCCATGGACCGCGGCTACCTCATAAACCCCGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCTCTTCCGTCCTCCACATAAACCCTTCCCAGTCCTCGCTCCTCCTCACGGAGCCTCTCTTCACTCCCCCCTCCATCCAGCGCTCGGTGGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTGTACGTGGCCCACTCCCCCTCCCTCGTCCACCTCCACGAGGCCAGCCGCAACAACGCCAACGGGCTCCTCTCCAAGGCCCAGTGCAGCCTCGTCCTCGACGCCGGGTTCTCCTTCACCCACGCCTCCCCCGTCTTCCACAACTTCGCCCTCAACTACGCCGTCAAGAGGATCGACCTCGGCGGCAAGGCCCTCACCAACTACCTCAAGGAGCTCGTCTCCTTCCGCTCCGTTAATGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAACTCTGCTTTGTCTCACTCGACGTCAACCGCGACCTCACCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTACGTGCTTCCGGATGGTGTCACGTACACAAAGGGGTTTGTTAAGTATCCAGATCAGGCGCAGCGATATCTTGCATTGAGGGAGGGTGGCCTTCATTCTTCATCACCAGTGCAAGCGCAGGAGGATGTGAATTTCACGGAAATTGCCGAGCACCCAGAGAACAGGAAGAGAGTTGATTTGACAAAAAATGAATTTGACTTGACAAATGAACGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACGTGCTGTTAATGCGTGCCATCCACATCTCCGCCCTGTTCTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCCGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACGACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGTTCACTGTTGGCATCAAGTCCGGATTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA
Predicted protein sequences of Glyma04g07540
>Glyma04g07540.1   sequence type=predicted peptide   gene model=Glyma04g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSTNVVVLDNGGGLIKAGIGGERDPSAIVPNCLYRPPSSKKWLHLHSGDEDLTSAAVRRPMDRGYLINPDLQREIWSHLFSSVLHINPSQSSLLLTEPLFTPPSIQRSVDELVFEDFNFRALYVAHSPSLVHLHEASRNNANGLLSKAQCSLVLDAGFSFTHASPVFHNFALNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVNRDLTIARKSGKENLFRCTYVLPDGVTYTKGFVKYPDQAQRYLALREGGLHSSSPVQAQEDVNFTEIAEHPENRKRVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLRPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYRVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH*






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