Glyma04g07520 - SoyBase

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Report for Sequence Feature Glyma04g07520

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5857501
stop:	5859566
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15550	AT	Annotation by Michelle Graham. TAIR10: gibberellin 3-oxidase 1 \| chr1:5344569-5346078 REVERSE LENGTH=358	SoyBase	E_val: 2.00E-109	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0008134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription factor binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0016707	GO-mf	Annotation by Michelle Graham. GO Molecular Function: gibberellin 3-beta-dioxygenase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7I6B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 3-beta-dioxygenase n=1 Tax=Medicago truncatula RepID=G7I6B9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUH8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUH8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07520

Paralog	Evidence	Comments
Glyma06g07630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g071000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07520

Limit To All Plant Sequences

>Glyma04g07520.1   sequence type=CDS   gene model=Glyma04g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACTCTCTCTGAAGCCTACAAAGCACACCCTCTCCACCTCAGTCACATTATTCCCTTAGACTTTTCTTCAGCCCTTAGCTTACCTGATTCTCACGCATGGCCTCACTGTCAACCCAATGATGATGCATCATCATCATCATCATCATCATCCATACCCATCATAGACCTCATGGATCCCAATGCTATGGACCTCATAGGCCATGCATGTGAGAAGTGGGGTGCTTTCCAATTGAAGAACCATGGCATACCTTTTGGTGTCATTGAAGATGTTGAAGAAGAGGCTAAAAGACTTTTTGCTCTTCCCACTGAACAGAAGTTGAAGGCTCTTCGATCTCCCGGTGGTGCCACTGGGTATGGCAGAGCAAGGATTTCACCGTTCTTCCCAAAGTTTATGTGGCACGAAGGATTCACCATCATTGGCTCTCCCTCTCACGATGCCAAAAAGATATGGCCTAATGATTATGCACGCTTTTGTGATTTGATGGAGAATTATGAGAAGCAAATGAAGGTTCTAGCGGATAGACTAACAGAGATGATATTCAACTTAATGGACATAAGTGAGGAAAAAAGAAAGTGGGTTGGTGCAAGCAACATAAGTGAAGCTGTTCAGTTAAATTTCTACCCAAGTTGTCCCGAGCCAAACCGAGCCATGGGCTTAGCCCCTCACACCGACACTTCTCTCTTCACAATTCTTCACCAAAGTCAAATCACTGGTCTTCAAATCTTCAAGGAAGGAAAAGGGTGGGTTCCTGTGCACCCTCACCCTAATACCCTGGTCGTGCACACAGGCGATCTCTTGCACATCATTTCCAACGCAAGGTTTCGCTGTGCACTTCACCGCGTAACGGTGAATAGGACATGGGAACGTTACTCTGTGGCTTATTTCTATTCTCCACCGATGGATTATGTAGTTTCTCCTTTGGTTCACTCTGTTGCTCGTTTTCGTGATGTGACTGTGAAGGAGTATATTGGGATTAAGGCTAAGAATTTTGGAGAAGCATTGTCCTTTATTAGTACTTGA

Predicted protein sequences of Glyma04g07520

Limit To All Plant Sequences

>Glyma04g07520.1   sequence type=predicted peptide   gene model=Glyma04g07520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTLSEAYKAHPLHLSHIIPLDFSSALSLPDSHAWPHCQPNDDASSSSSSSSIPIIDLMDPNAMDLIGHACEKWGAFQLKNHGIPFGVIEDVEEEAKRLFALPTEQKLKALRSPGGATGYGRARISPFFPKFMWHEGFTIIGSPSHDAKKIWPNDYARFCDLMENYEKQMKVLADRLTEMIFNLMDISEEKRKWVGASNISEAVQLNFYPSCPEPNRAMGLAPHTDTSLFTILHQSQITGLQIFKEGKGWVPVHPHPNTLVVHTGDLLHIISNARFRCALHRVTVNRTWERYSVAYFYSPPMDYVVSPLVHSVARFRDVTVKEYIGIKAKNFGEALSFIST*

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