Glyma04g07440 - SoyBase

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Report for Sequence Feature Glyma04g07440

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5776826
stop:	5778078
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25625	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:10906562-10907099 FORWARD LENGTH=151	SoyBase	E_val: 1.00E-18	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K8Z0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8Z0_SOYBN	SoyBase	E_val: 1.00E-83	ISS
UniRef100_Q8S8K8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q8S8K8_ARATH	SoyBase	E_val: 8.00E-16	ISS

Expression Patterns of Glyma04g07440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07440

Paralog	Evidence	Comments
Glyma06g07560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g070000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07440

Limit To All Plant Sequences

>Glyma04g07440.2   sequence type=CDS   gene model=Glyma04g07440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGACCACTTGCTTACTAAGCCTTCCCCCTCTTACTTCAAACCAACCCTCCAACGCTTCTTTCAACCCCGCAAAGCCACCTCAACTTTCATCGGTGAAAAACGAAACATGTTGGAAGAGGCAATGCGTTATGATGGGAGTGGCATCCATAATTGGACTAGAAATGTGCAATTTAGTGGCACTGGCCCACGAAGCAATTGAAATCACAACTATGCCAATTGGTAACCAAGTAGTATCAAATAGCAATTCTTATGGTGGCGCCAAATGGAGCCAGAAAAGAACGTGCTCACCTTGGCAAGGCAACTCGCTCGAAACCATCATGCCGGAGAACCTTCCCCGGCCGTCGGCACGGCGGCGATACGAGGCTGTTCGTTCCTCCACCAAGACTGTGCCACCGTCCTCAGCCCCGATCATAGTCCAAAGCAACAAGGGCAGCTGCTTCTCCATGTGA

Predicted protein sequences of Glyma04g07440

Limit To All Plant Sequences

>Glyma04g07440.2   sequence type=predicted peptide   gene model=Glyma04g07440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTTCLLSLPPLTSNQPSNASFNPAKPPQLSSVKNETCWKRQCVMMGVASIIGLEMCNLVALAHEAIEITTMPIGNQVVSNSNSYGGAKWSQKRTCSPWQGNSLETIMPENLPRPSARRRYEAVRSSTKTVPPSSAPIIVQSNKGSCFSM*

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