SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07350

Feature Type:gene_model
Chromosome:Gm04
Start:5700765
stop:5703998
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55190AT Annotation by Michelle Graham. TAIR10: RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221 SoyBaseE_val: 4.00E-165ISS
GO:0006184GO-bp Annotation by Michelle Graham. GO Biological Process: GTP catabolic process SoyBaseN/AISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006913GO-bp Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0096 KOG GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily JGI ISS
PTHR24071Panther FAMILY NOT NAMED JGI ISS
PF00071PFAM Ras family JGI ISS
UniRef100_Q8H156UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding nuclear protein Ran-3 n=1 Tax=Arabidopsis thaliana RepID=RAN3_ARATH SoyBaseE_val: 2.00E-162ISS
UniRef100_UPI00019AA8E8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00019AA8E8 related cluster n=1 Tax=unknown RepID=UPI00019AA8E8 SoyBaseE_val: 6.00E-165ISS

Expression Patterns of Glyma04g07350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07350
ParalogEvidenceComments
Glyma06g07400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g069100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g07350
>Glyma04g07350.2   sequence type=transcript   gene model=Glyma04g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTGCCCAATCAGCAAACCGTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTCACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAGGTTCATCCGTTGGATTTTTTCACTAACTGCGGAAAGATTCGATTCTATTGTTGGGATACTGCTGGGCAAGAGAAGTTTGGCGGCCTCAGAGATGGATATTATATCCATGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGTCTAACATACAAGAATGTCCCTACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTACGAGATATCTGCTAAGAGCAACTACAATTTTGAAAAGCCATTTTTGTACTTGGCCAGGAAACTTGCAGGCGATACTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCGCAACAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTTCCTGACGACGATGATGATCAATTTGAGTAG
Coding sequences of Glyma04g07350
>Glyma04g07350.1   sequence type=CDS   gene model=Glyma04g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGCCCAATCAGCAAACCGTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTCACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAGGTTCATCCGTTGGATTTTTTCACTAACTGCGGAAAGATTCGATTCTATTGTTGGGATACTGCTGGGCAAGAGAAGTTTGGCGGCCTCAGAGATGGATATTATATCCATGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGTCTAACATACAAGAATGTCCCTACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTACGAGATATCTGCTAAGAGCAACTACAATTTTGAAAAGCCATTTTTGTACTTGGCCAGGAAACTTGCAGGCGATACTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCGCAACAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTTCCTGACGACGATGATGATCAATTTGAGTAG

>Glyma04g07350.2   sequence type=CDS   gene model=Glyma04g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTGCCCAATCAGCAAACCGTCGATTACCCCAGCTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTCACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAGGTTCATCCGTTGGATTTTTTCACTAACTGCGGAAAGATTCGATTCTATTGTTGGGATACTGCTGGGCAAGAGAAGTTTGGCGGCCTCAGAGATGGATATTATATCCATGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGTCTAACATACAAGAATGTCCCTACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTACGAGATATCTGCTAAGAGCAACTACAATTTTGAAAAGCCATTTTTGTACTTGGCCAGGAAACTTGCAGGCGATACTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCGCAACAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTTCCTGACGACGATGATGATCAATTTGAGTAG
Predicted protein sequences of Glyma04g07350
>Glyma04g07350.1   sequence type=predicted peptide   gene model=Glyma04g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDTNLHFVESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDDQFE*

>Glyma04g07350.2   sequence type=predicted peptide   gene model=Glyma04g07350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDTNLHFVESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDDQFE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo