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Report for Sequence Feature Glyma04g07290

Feature Type:gene_model
Chromosome:Gm04
Start:5666401
stop:5667345
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23030AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:8156745-8158842 FORWARD LENGTH=612 SoyBaseE_val: 8.00E-11ISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0000151GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR23315Panther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING JGI ISS
PTHR23315:SF7Panther UNCHARACTERIZED JGI ISS
PF05804PFAM Kinesin-associated protein (KAP) JGI ISS
UniRef100_B9SJ37UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9SJ37_RICCO SoyBaseE_val: 1.00E-09ISS
UniRef100_I1JUF3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JUF3_SOYBN SoyBaseE_val: 1.00E-162ISS

Expression Patterns of Glyma04g07290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g07290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g068600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07290
>Glyma04g07290.2   sequence type=CDS   gene model=Glyma04g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGTATCATCAGTATCCCGTGTTGTTGACACTATTACTGAATGTCTATCCCTGGTTCAATCAGACTCAATTGAAGTTCAGGAGAAAGCTCTTCAAACGTTGGCTTCCATCACCAAGGTTAGTCCCCAAAACAGAACCATGCTAGCTCAAACAGATAATGCCATCCCAACATTAGCCTCGCTAACAAACTCTTCCTCCCCTGTCATCCAGACACTTTCCTTGTTAACCCTCTTCAACCTATCCCTCAATCCTGATTTGAAGCAATCTCTTGCTGACATGGAAACCATTCACTACCTCAATTCCCTCATCACCTCAACAAGTTCCCTTGATTCCTCCAAATTGGCCTCCTCGCTGATTTGCAGCTTGGCCATGCATGACAAAAACAAGGCCAAATTTGGGGTGGCAGGCACAGTTCAGTTGCTAGTGAAAGCCATTGAAGGTTCTCATGATGCACACCACCTTTTGAGTTCTTTGGCTGAGCTTGTTCATTTTCATGGAAATTGCACTTTGGCCGTGAGAGCTGGGGCAGTGCCAGTGCTACTTCGAGTTGCGAAGGGCACTGATAATGAGGACTTGGCTGGAACTTCTCTTGCTGTTCTTAGTCTCCTTGCGAGGTTTGATGAAGGGTTGAATGGTTTAAAGAGAACGGATGAGATTGTTAAGGCAATGCTGAGTGTGATGAAAGGGAGGTCCTTGTTGAGGTTGTTGGGTGATACAAATATGTAA
Predicted protein sequences of Glyma04g07290
>Glyma04g07290.2   sequence type=predicted peptide   gene model=Glyma04g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSSVSRVVDTITECLSLVQSDSIEVQEKALQTLASITKVSPQNRTMLAQTDNAIPTLASLTNSSSPVIQTLSLLTLFNLSLNPDLKQSLADMETIHYLNSLITSTSSLDSSKLASSLICSLAMHDKNKAKFGVAGTVQLLVKAIEGSHDAHHLLSSLAELVHFHGNCTLAVRAGAVPVLLRVAKGTDNEDLAGTSLAVLSLLARFDEGLNGLKRTDEIVKAMLSVMKGRSLLRLLGDTNM*






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