Report for Sequence Feature Glyma04g07280
Feature Type: gene_model
Chromosome: Gm04
Start: 5657170
stop: 5662776
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g07280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20060 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252
SoyBase E_val: 7.00E-129 ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG2112
KOG
Lysophospholipase
JGI ISS
PTHR10655 Panther
LYSOPHOSPHOLIPASE-RELATED
JGI ISS
PTHR10655:SF5 Panther
CARBOXYLESTERASE
JGI ISS
PF02230 PFAM
Phospholipase/Carboxylesterase
JGI ISS
UniRef100_C6TJQ1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJQ1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_G7JB53 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-protein thioesterase n=1 Tax=Medicago truncatula RepID=G7JB53_MEDTR
SoyBase E_val: 1.00E-160 ISS
Expression Patterns of Glyma04g07280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g07280
Paralog Evidence Comments
Glyma06g07360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g07280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g068500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g07280
Coding sequences of Glyma04g07280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g07280.5 sequence type=CDS gene model=Glyma04g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCTACAGTGGCTCCTCAATGAGTTCTGGTAGTGGATCTTCTAGAAGGACATTTGAGTTTGGAAGGACCCATGTGGTCAGACCTAAAGGGAAACACCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGCTCAAGCTGGTCCCAACTCTTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCTACACGGCCTGTAGCCTTATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGCTGGGGAGATTTCAGAAGAAGCTCCTAGTGATTTGGAGGGGTTAGATGCTTCTGCAGCACACGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATTGGGGGCTTCAGTATGGGTGCTGCAACTGCACTATACTCAGCTACATGCCATGTTTTGGGGCACTATGGTAATGGAAACATTTACCCTATCAACTTAAGTGCTATTGTTTCTTTAAGTGGCTGGCTTCCTTGTTCAAGGACCTTGAAAAACCAAATTGAACGATCACGTGATGGCATAAGGCGTGCAGCATCGTTGCCCTTATTTCTCTGCCATGGAAGAGGTGATGATGTGGTTGCATATGAACATGGGGAGAGGTCTGCAGTGACCTTAAGTTCATCAGGATTCCAGAATCTTATATTTAGGAGCTACAATGGGTTGGGTCACTATACAGTCCCTGAAGAGACTGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAACTAG
Predicted protein sequences of Glyma04g07280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g07280.5 sequence type=predicted peptide gene model=Glyma04g07280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSYSGSSMSSGSGSSRRTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPVALFGGFPCTAWFDAGEISEEAPSDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHVLGHYGNGNIYPINLSAIVSLSGWLPCSRTLKNQIERSRDGIRRAASLPLFLCHGRGDDVVAYEHGERSAVTLSSSGFQNLIFRSYNGLGHYTVPEETDEVCRWLTANLGLEGFRLN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
