Glyma04g07270 - SoyBase

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Report for Sequence Feature Glyma04g07270

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5648187
stop:	5650777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15680	AT	Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein \| chr3:5315437-5316048 FORWARD LENGTH=164	SoyBase	E_val: 6.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7JB51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7JB51_MEDTR	SoyBase	E_val: 3.00E-75	ISS
UniRef100_I1JUE6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JUE6_SOYBN	SoyBase	E_val: 3.00E-118	ISS

Expression Patterns of Glyma04g07270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07270

Paralog	Evidence	Comments
Glyma06g07350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g068400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07270

Limit To All Plant Sequences

>Glyma04g07270.3   sequence type=transcript   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTTCGAAATTCCTTTTACCCTTTTTCCAAATTTAGTTTTATGATGATATCACATTGGGTTGAAGGAAGCAAATTAAAAAGAAGCACTCGTTGCTCTGCCTGCGCACTGGCTAGCTAGTTACTTGGATCTGCCCGATTTTCGAGGCCTTAATTGGCAGTATAAAAACCACCTCAGCCTCTTCACTCATCTGCACCACAAACCACATAATTCGACAACACTCTCTCCTAATTGTTCAACTTCTGGAGCTACTTCCACCCCACTAGCTACCTTCATTGTATTTTCAGTCTCCAAACTCCAAAGGGAAAATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAGTCGTGCCAGCGATGCGGGGAGCCTAGGAGTGGTGGCGGCGGCGACTACGGCGGAGGCTTCGGTGGTGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGACCATTCGACGCCGACATGCCTCGAATGAGACCATACGGCTTCGGCGGCGGCTCCTCCGCCCGTCCTGGCTGGAAGTCCGGCGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGCCAGGTCTCCCTATTCATCGTAGAGTTCCTCATCAATCCATGTGGTTTGCTGTCTAAGGAGAGAATCGAGAGGCCATCCCTATTTCCTAGTGATAGTTACCTTTTCTTTTTTGTTCTCTTGCTTCCATATATGCTACTTTCTTCATCATCTCATGCGGATATTTATTTTTGCTTTTTTTTTTCTTTTCTTCCAGCTAGGAAGCTTTAGGTGAATTATGATTTTGAGGTTTTGTTGGCCCTGAGTGAGTCTGGTATATGATGACTCAGCAGCTAGCTCATGTACTTTTTTAAGTATCAACAATTTAATATCAGTGTTAATGTGTATGTTTCGAGAGGGGGCTAGCTTCTAAGCCTCATCATGACTATGATTTGGTGCAAAGATGTTCTTTATCTAACTCTCCGAGATGTGTTCAGAAAAGATGCTCTTTTTGCTTCTGTCTTTCTCTCTTTAACTCTCAGATATACACATATATACAGCTTTATATTGGGGACGTGGTCCAAGG

>Glyma04g07270.4   sequence type=transcript   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTAGCTACCTTCATTGTATTTTCAGTCTCCAAACTCCAAAGGTAAATATCATTCCTTCCCTACTTGTTCATAGTATTTTTTTTCCTTTTCTTTTTAAATTCTCGTCGCTAGCTTTTCCCATGCATACGTTTTCTGGCTCACTTTGGCATTTTTCTACGTTAATAAAAACATAAGAGTACATACCTCCAAGTGATTTAACTTTTATTTTGTTGAATTAATTATTATATTGAGGTGAAATTTTGATTCTAAGGACCGTATCCTAATCACATTTTTTTTAAAAAAATTAATATTAATTATTAATTTATCAGTTTTTATTAGTAGAAAGGGGTTGATAATTTGATATTTTTTGTGAACTTCTTTGTTTTTCTTATTTGTTTGATTTTTTTATATTTACTAATTAAAGATGTTAAAATAAAGAAAATATTAAAAATATTTCAAAATCCAGCACGACAGTATCCAAAACACATGAGAACTTGCATTTAATTTTTGTTTTTAAAAAAAATAGTACTCTATCATACTATTGAGGATATATAACTTTATATGTGCATGGTGGAATTTGGAAACTATGAAGGGAAAATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAGTCGTGCCAGCGATGCGGGGAGCCTAGGAGTGGTGGCGGCGGCGACTACGGCGGAGGCTTCGGTGGTGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGACCATTCGACGCCGACATGCCTCGAATGAGACCATACGGCTTCGGCGGCGGCTCCTCCGCCCGTCCTGGCTGGAAGTCCGGCGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGCCAGGTCTCCCTATTCATCGTAGAGTTCCTCATCAATCCATGTGGTAATTGTAATAAACTATATATATCTTCTTGCATAACTAGAGTTATCTAATTAATGTCACCATGCTAGGTGTGTGTA

Coding sequences of Glyma04g07270

Limit To All Plant Sequences

>Glyma04g07270.1   sequence type=CDS   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCATGGTGGAATTTGGAAACTATGAAGGGAAAATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAGTCGTGCCAGCGATGCGGGGAGCCTAGGAGTGGTGGCGGCGGCGACTACGGCGGAGGCTTCGGTGGTGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGACCATTCGACGCCGACATGCCTCGAATGAGACCATACGGCTTCGGCGGCGGCTCCTCCGCCCGTCCTGGCTGGAAGTCCGGCGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGCCAGGTCTCCCTATTCATCGTAG

>Glyma04g07270.3   sequence type=CDS   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAGTCGTGCCAGCGATGCGGGGAGCCTAGGAGTGGTGGCGGCGGCGACTACGGCGGAGGCTTCGGTGGTGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGACCATTCGACGCCGACATGCCTCGAATGAGACCATACGGCTTCGGCGGCGGCTCCTCCGCCCGTCCTGGCTGGAAGTCCGGCGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGCCAGGTCTCCCTATTCATCGTAG

>Glyma04g07270.4   sequence type=CDS   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCATGGTGGAATTTGGAAACTATGAAGGGAAAATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTGAACTTCCAGAGAAGAGAGTCGTGCCAGCGATGCGGGGAGCCTAGGAGTGGTGGCGGCGGCGACTACGGCGGAGGCTTCGGTGGTGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCGGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGCCCCCAAGGAGGACTCCTCCGCCGGACCATTCGACGCCGACATGCCTCGAATGAGACCATACGGCTTCGGCGGCGGCTCCTCCGCCCGTCCTGGCTGGAAGTCCGGCGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGTTACCGATGCAATGCACCGAGGGACTCTAGTAGTGCCAGGTCTCCCTATTCATCGTAG

Predicted protein sequences of Glyma04g07270

Limit To All Plant Sequences

>Glyma04g07270.1   sequence type=predicted peptide   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCMVEFGNYEGKMSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDADMPRMRPYGFGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

>Glyma04g07270.3   sequence type=predicted peptide   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDADMPRMRPYGFGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

>Glyma04g07270.4   sequence type=predicted peptide   gene model=Glyma04g07270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCMVEFGNYEGKMSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSAGPFDADMPRMRPYGFGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSARSPYSS*

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