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Report for Sequence Feature Glyma04g07240

Feature Type:gene_model
Chromosome:Gm04
Start:5633479
stop:5635807
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07240
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11280AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3597321-3598347 FORWARD LENGTH=209 SoyBaseE_val: 3.00E-112ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K8W7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8W7_SOYBN SoyBaseE_val: 6.00E-149ISS

Expression Patterns of Glyma04g07240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07240
ParalogEvidenceComments
Glyma06g07340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07240 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g068100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07240
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07240
>Glyma04g07240.3   sequence type=CDS   gene model=Glyma04g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAACATAAAGTAGCGGAAATTACAAACGGATACCCTGTTACTGTTAGCTGTGACAGGGAAGAAACTCAAGAAAGAGGTTCCACAGCGTCGAGAAGCTTCAGATTCTCCGTCTCCACCATGGCAACTCCCACAGCACCCTCGAAATGGACCGACAACGTTTCCTCAATAGCATCTCGCATCTTCTTCCTCCTCATCATCTTCCAGATTCCTCTTTTCAGGGTGACTTGCAGATCTGGCATGTGTACAACCCCTTTGCATGTCACGTCATCGCAGTTAATTGCAAGTGAGATCTTTCCTGTTGTTGTTGTGAAGGGTCTTCTGTACCCAGGGGCTGCAGTGAACGGCCTCATCCACAACATGACCGTTCCAAGTTGGGATAGTTTGTTGGACTTGTATAACTTGACCGGTGTGAAGGAAGCTTCTGCAGTAACTGATCTTCAGCGCTTGGAGGTTCTTGCAGGGAGCTACTTCACAGTGGCCGGAGCACTTGTGGGTATTCTAAAACCCGGGAGAATGAGCATGTTCGGGTCCCTACTTATAATTTGGGGGCTGGTCAAAGAAGGGATTTTAGGAAAGCCAGTAAATACTGATCCTGCAAAAGCCGTGTACGTCTACCCAACAATGGTGATCGCCATGATATGTGCTTTCTCATCTGTTAAGTATGATGTGAAGAAGGTTGTCAGGTCAGCCCCTATCAAGTCGTCTGCAAGACCACTCAAGAACTCATCTAAGTCTAAGCTGAAATAA
Predicted protein sequences of Glyma04g07240
>Glyma04g07240.3   sequence type=predicted peptide   gene model=Glyma04g07240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RKHKVAEITNGYPVTVSCDREETQERGSTASRSFRFSVSTMATPTAPSKWTDNVSSIASRIFFLLIIFQIPLFRVTCRSGMCTTPLHVTSSQLIASEIFPVVVVKGLLYPGAAVNGLIHNMTVPSWDSLLDLYNLTGVKEASAVTDLQRLEVLAGSYFTVAGALVGILKPGRMSMFGSLLIIWGLVKEGILGKPVNTDPAKAVYVYPTMVIAMICAFSSVKYDVKKVVRSAPIKSSARPLKNSSKSKLK*






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