Glyma04g07230 - SoyBase

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Report for Sequence Feature Glyma04g07230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5627722
stop:	5630930
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11270	AT	Annotation by Michelle Graham. TAIR10: overexpressor of cationic peroxidase 3 \| chr5:3595557-3597076 REVERSE LENGTH=354	SoyBase	E_val: 1.00E-68	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010118	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal movement	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_C1MM68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ocp3-like homeobox transcription factor n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MM68_MICPC	SoyBase	E_val: 2.00E-06	ISS
UniRef100_I1JUE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUE1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07230

Paralog	Evidence	Comments
Glyma06g07330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g068000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07230

Limit To All Plant Sequences

>Glyma04g07230.1   sequence type=CDS   gene model=Glyma04g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGTTTTTCAGTGTTTATGGTGTGCTCGGAGTGACCCCTTCCTCACTCTTCCTTTCCAACGCAAACCACTTCTTTGCTCTGTCTTTCTTTCCTCTCGCCCTCGTAACCTCTGCTCTTCAATTGTCGCTGCTGCTTCCAAAAACAAAAACAAGCAAAAAAAGTCTCGTGATCATGTTACTAAGGACGATGAAGATGGCGTGGACGCTTTTGAGCTGCTCTTCAAGCAACTCGAAGAAGATCTCAAACGCGGTGATTTGTCAGACGATGATGGTGAGGATGAGATAAGTGAAGAAGACATGGCATTGCTTGAACGTGAGTTGGAAAATGCTTTGGGGGACTTTGATGGTGAATTGTTAAACTCGGATGTAATCGACATCGAAACTGGCGGTGATCCAGAAAATGATGATGATATTGAGGATGGTGGAGATGAAAGGTCACTGAACCTTAGGAATTGGCAGATGAAGAAATTGGCTAGAGCCTTAAAAGCTGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAATTGCTTCGTGACCCTCCTCCAAATCTTTTAATGATGAGTCTATCAATACCTGATGAACCCACAACGACTGTAGTATCACTTGAAACTAAGCCCAGTGAGATTGTTCATAAAGAAACAAGTATTGATCATGCAGAAATAGAATCTGAACCTAAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGCATGCTCAAAAGCGACTGAAAAAGGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCAAAACGACCCACTAATGCAATGATCAGTAGTATCGTACATGTAACAAACATTCCTCGAAAAAAAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGCCGTGTTCCTTACCAGCGCTCTGTTCCTGAAACTGCATGA

Predicted protein sequences of Glyma04g07230

Limit To All Plant Sequences

>Glyma04g07230.1   sequence type=predicted peptide   gene model=Glyma04g07230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVFQCLWCARSDPFLTLPFQRKPLLCSVFLSSRPRNLCSSIVAAASKNKNKQKKSRDHVTKDDEDGVDAFELLFKQLEEDLKRGDLSDDDGEDEISEEDMALLERELENALGDFDGELLNSDVIDIETGGDPENDDDIEDGGDERSLNLRNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLRDPPPNLLMMSLSIPDEPTTTVVSLETKPSEIVHKETSIDHAEIESEPKAKVPVHTLQRNWHAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKKVVKWFEDKRAEEGVPDRRVPYQRSVPETA*

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