Glyma04g07220 - SoyBase

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Report for Sequence Feature Glyma04g07220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5620060
stop:	5626081
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32410	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase 1 \| chr4:15641009-15646388 REVERSE LENGTH=1081	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009833	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary cell wall biogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016759	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity	SoyBase	N/A	ISS
GO:0016760	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF21	Panther	CELLULOSE SYNTHASE-RELATED	JGI		ISS
PF03552	PFAM	Cellulose synthase	JGI		ISS
UniRef100_I1JUE0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUE0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6DUJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CesA1 n=1 Tax=Acacia mangium RepID=Q6DUJ3_ACAMN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07220

Paralog	Evidence	Comments
Glyma06g07320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g067900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07220

Limit To All Plant Sequences

>Glyma04g07220.1   sequence type=CDS   gene model=Glyma04g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAGTGCGGGAATGGTTGCCGGTTCGCATAAACGGAACGAGCTCGTTCGGATTCGCCACGATTCTTCTGACAGCGGGTCTAAACCCATGAAGAATTTGAATGGGCAAATCTGTCAAATATGCGGTGATACTGTTGGATTAACTGCTACTGGTGATGTGTTTGTTGCTTGCAACGAGTGTGCTTTCCCTGTGTGTCGTCCTTGTTATGAATATGAGCGGAAGGATGGGAACCAGTCTTGTCCACAGTGCAAGACTAGATACAAGAGGCACAGAGGGAGTCCTCGAGTTGAGGGTGATGAAGATGAAGATGATTCTGATGATATCGAGAATGAGTTCAATTATGCCCAAGGAAAAGCCAAGGCCAGGCGGCAGTGGGAAGACGATCCTGACCTGTCGTCGTCTTCTAGACGTGAATCTCAACAGCCAATTCCCCTCCTCACCAATGGCCAAACGATGTCTGGTGAGATTCCATGTGCCACACCTGATACTCAATCTGTGCGAACTACTTCAGGTCCTCTGGGCCCATCTGAAAAGGTTCACTCACTTCCCTATGTTGATCCAAGGCAACCAGTTCCAGTAAGAATTGTGGACCCATCAAAGGACTTGAATTCTTATGGTCTGGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAGCTTAAGCAGGAGAAAAATATGGTGCAAATGACTGGTAGATACGCTGAAGGGAAAGGTGGAGATGTTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTAGATGATGCTCGACAACCTATGAGTCGTGTTGTGCCAATTCCTTCATCTCAGCTGACGCCTTATCGTGTTGTTATCATCCTCCGGCTGATTATTCTTGGCTTCTTCTTACAATATCGTGTAACTCATCCTGTGAAAGATGCATACCCACTGTGGTTGACATCAGTTATTTGTGAGATTTGGTTTGCCTTATCCTGGCTCTTGGATCAGTTTCCAAAATGGTCTCCCATTAATCGTGAGACTTATCTTGAACGGCTTGCTTTAAGGTATGATCGTGAAGGAGAACCATCACAGTTAGATCCTGTTGATGTGTTTGTTAGTACAGTGGATCCCCTCAAAGAGCCACCTCTTGTTACTGCAAACACCGTTTTGTCTATACTTTCTGTTGATTACCCTGTCGACAAAGTTTCCTGCTATGTATCAGATGATGGTTCAGCTATGTTGACCTTTGAAGCACTATCTGAAACAGCTGAGTTTGCGAAGAAGTGGGTGCCCTTTTGCAAAAAGCACAATATTGAACCAAGAGCCCCAGAGTTTTATTTTGCCCAGAAGATTGATTACTTAAAGGACAAGATTCAGCCCTCGTTTGTAAAAGAGCGACGGGCAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATCAATGCCCTTGTAGCCAAAGCTCAGAAGATGCCAGAGGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCTAGGGATCATCCGGGAATGATTCAGGTGTTTTTAGGTCATAGTGGGGGGCTGGATACAGATGGAAATGAGCTGCCTAGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAACATCACAAGAAGGCTGGAGCTATGAATGCTTTGATTCGAGTTTCTGCTGTCTTGACCAATGGTGCATATCTTCTGAATGTGGATTGTGATCACTATTTCAATAATAGCAAAGCCCTCAAAGAAGCCATGTGTTTCATGATGGATCCTGTTCTTGGAAAGAAGACATGCTATGTTCAATTTCCTCAGAGATTTGACGGCATTGACTTGCACGATCGATATGCCAATCGCAATATTGTGTTCTTTGATATCAACATGAAAGGTCAGGATGGTGTTCAGGGCCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATAGGCAAGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAACCTAACATTATTGTAAAGAGTTGTTGCGGTTCTAGAAAGAAGGGAAAGGGTGGCAATAAGAAGTACAGTGACAAGAAGAAGGCGATGGGAAGAACTGAATCCACTGTACCCATATTTAATATGGAAGACATAGAGGAGGGTGTTGAAGGTTATGATGATGAAAGGACACTACTTATGTCTCAAAAGAGCTTGGAGAAGCGTTTTGGTCAGTCTCCAGTTTTTATTGCTGCCACTTTCATGGAGCAGGGTGGCATTCCACCTTCAACGAACCCTGCAACTCTTCTTAAGGAAGCAATCCATGTTATCAGCTGTGGTTACGAAGACAAGACAGAATGGGGCAAAGAGATTGGATGGATCTATGGCTCTGTGACAGAAGATATCTTGACTGGGTTCAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCTATCAATCTTTCTGATCGTCTCAATCAGGTGCTTCGGTGGGCCTTGGGTTCAATTGAGATCTTTCTAAGCAGGCATTGTCCCTTGTGGTATGGCTACAATGGGAAGTTGAAGCCTCTGATGAGGCTTGCTTATATTAACACCATTGTCTACCCGTTTACCTCAATCCCATTGATTGCTTACTGTACGCTTCCTGCATTTTGTCTTCTCACAAATAAATTTATTATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTTCTCTTTGTCTCCATTTTTACCACTTCAATTCTTGAGCTTAGGTGGAGTGGGGTCAGTATAGAAGACTGGTGGAGAAATGAACAGTTCTGGGTTATCGGTGGGACATCTGCGCATCTCTTTGCTGTGTTCCAGGGGCTTCTAAAAGTGCTTGCTGGGATCGATACAAATTTTACTGTTACATCGAAGGCATCGGACGAGGATGGGGACTTTGCCGAGCTTTATGTGTTTAAATGGACATCACTTCTCATCCCTCCTACAACAGTGCTTATTGTGAATTTGGTTGGGATTGTGGCTGGTGTATCCTATGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGCAAGCTGTTCTTTGCTATCTGGGTCATTGCCCATCTATACCCATTCTTGAAGGGTCTCTTGGGCAGGCAAAATCGTACCCCAACCATTGTTATTGTTTGGTCCGTTCTTCTTGCTTCAATATTCTCCTTGCTGTGGGTGAGGATTGATCCCTTCACCTCTGACTCCAACAAATTAACCAATGGTCAATGTGGCATCAACTGTTAG

Predicted protein sequences of Glyma04g07220

Limit To All Plant Sequences

>Glyma04g07220.1   sequence type=predicted peptide   gene model=Glyma04g07220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASAGMVAGSHKRNELVRIRHDSSDSGSKPMKNLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHRGSPRVEGDEDEDDSDDIENEFNYAQGKAKARRQWEDDPDLSSSSRRESQQPIPLLTNGQTMSGEIPCATPDTQSVRTTSGPLGPSEKVHSLPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMVQMTGRYAEGKGGDVEGTGSNGEELQMVDDARQPMSRVVPIPSSQLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLERLALRYDREGEPSQLDPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPVLGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINMKGQDGVQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGGNKKYSDKKKAMGRTESTVPIFNMEDIEEGVEGYDDERTLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYNGKLKPLMRLAYINTIVYPFTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRIDPFTSDSNKLTNGQCGINC*

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