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Report for Sequence Feature Glyma04g07210

Feature Type:gene_model
Chromosome:Gm04
Start:5613361
stop:5618026
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32400AT Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr4:15638686-15640238 FORWARD LENGTH=392 SoyBaseE_val: 2.00E-179ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006839GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015215GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide transmembrane transporter activity SoyBaseN/AISS
KOG0752 KOG Mitochondrial solute carrier protein JGI ISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF87Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_G7JB41UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein brittle-1 n=1 Tax=Medicago truncatula RepID=G7JB41_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JUD9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUD9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g07210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07210
ParalogEvidenceComments
Glyma06g07310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g067800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07210
>Glyma04g07210.1   sequence type=CDS   gene model=Glyma04g07210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGAAGGGGAATCCAACTGTTTGATGAGAAAATAGATGTTTTTTTCTCTGTCAGCAATTTGGGGTTTGAATCCAAAGATGGCTACCATCAATTCGGAGGTTTGTTTGCCAGTGTTGGTCAAATGGGAATGGGGGTTGGCGTGCAACCTAACGACCCTTCTGATTCTCGTGACAATGGTGGCATGAAACTTCCCTTAAACGAATTGTTCCTCAAGCATGTTCAACCTCAGGGGAAGGAAGAGGTTGTTGAGGAAGGAGCTAAGGGGAAGAAGAATAGAAAGGGTGGTGGTGTTTCACTCAAGCTTAAGATCAGGAACCCTTCACTGAGGAGGTTGTTTAGTGGGGCAGTTGCCGGTGCCGTGTCTCGGACTGCTGTGGCGCCTTTGGAGACTATAAGGACTCTCTTGATGGTGGGGAGTAGTGGCCATTCCACCACTGAGGTGTTCAACAATATTATGAAAACTGATGGCTGGAAGGGATTGTTTAGGGGTAATTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTTGCTTTTGATACAGTAAACAAGAACCTATCCCCAAAGCCTGGAGAGCAGTCCAAAATCCCAATTCCTGCATCTTTGATTGCAGGTGCCTGTGCTGGAATCAGTTCAACTATATGTACATATCCTCTTGAATTAGTCAAGACTAGATTAACTGTCCAGAGCGATATTTATCATGGTCTGCTTCATGCATTCGTGAAAATAATTCGAGAAGAGGGTCCTGCTCAACTTTATAGAGGCCTCGCAGCTAGTCTTATTGGAGTTGTCCCGTATGCTGCTACCAATTACTATGCCTACGACACTTTAAGGAAAGCATACCAGAAAATTTTTAAAGAAGAGAAGGTCGGCAACATTGAAACCCTTTTGATTGGTTCGGTAGCTGGTGCTTTTTCAAGTAGTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCAGATGCAACTTGGAGCTCTCAGTGGAAGGCAGGTTTACAAGAATGTGTTTCATGCCCTTGCATGCATATTTGAACAAGAAGGCATACATGGTTTATATAGAGGGCTAGCACCTAGTTGCATGAAGTTGGTACCAGCCGCTGGAATCTCTTTCATGTGTTACGAAGCATTGAAGAGGATATTGCTAGAAAACGACGAGGAGGATTAG
Predicted protein sequences of Glyma04g07210
>Glyma04g07210.1   sequence type=predicted peptide   gene model=Glyma04g07210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRRGIQLFDEKIDVFFSVSNLGFESKDGYHQFGGLFASVGQMGMGVGVQPNDPSDSRDNGGMKLPLNELFLKHVQPQGKEEVVEEGAKGKKNRKGGGVSLKLKIRNPSLRRLFSGAVAGAVSRTAVAPLETIRTLLMVGSSGHSTTEVFNNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAFDTVNKNLSPKPGEQSKIPIPASLIAGACAGISSTICTYPLELVKTRLTVQSDIYHGLLHAFVKIIREEGPAQLYRGLAASLIGVVPYAATNYYAYDTLRKAYQKIFKEEKVGNIETLLIGSVAGAFSSSATFPLEVARKQMQLGALSGRQVYKNVFHALACIFEQEGIHGLYRGLAPSCMKLVPAAGISFMCYEALKRILLENDEED*






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