Glyma04g07190 - SoyBase

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Report for Sequence Feature Glyma04g07190

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5595616
stop:	5597263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25400	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-sugar transporter family protein \| chr5:8823283-8824332 FORWARD LENGTH=349	SoyBase	E_val: 0	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1441	KOG	Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_G7JB38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastidic phosphate translocator-like protein1 n=1 Tax=Medicago truncatula RepID=G7JB38_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUD7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07190

Paralog	Evidence	Comments
Glyma06g07290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g067700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07190

Limit To All Plant Sequences

>Glyma04g07190.1   sequence type=CDS   gene model=Glyma04g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAAGGTGGATCTCTGAGCGACGGCGTGGTGAAGAAGATCGTTCTCTCCTACAGCTACGTGGCAATATGGATCTTCCTGAGCTTCACCGTCATCGTCTACAACAAGTACATCCTGGACAAGAAGATGTACAACTGGCCCTTCCCCATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCACCCTGGCCCTCCTCCTCGTCCGCGTCTTCCGCCTCGTCGAGCCCGTCTCCATGTCCCGCGACGTCTACCTCTCCTCCGTCGTCCCCATCGGCGCCCTCTACTCCCTCTCCCTCTGGCTCTCCAACTCCGCCTACATCTACCTCTCCGTCTCCTTCATCCAGATGCTCAAGGCCCTCATGCCTGTCGCTGTTTACTCCATCGGCGTCATGCTCCGAAAAGAATCCTACAAAAACGACACCATGCTTAATATGCTCTCCATCTCCCTCGGCGTCGGCGTCGCCGCCTACGGCGAGGCCCGCTTCGACGCCTGGGGCGTCCTCCTCCAGCTCGGCGCCGTCGCCTTCGAGGCCACCCGCCTCGTCATGATCCAAATCCTCCTCACCTCCAAGGGGATCTCGCTTAACCCAATCACTTCTCTCTACTACGTCGCGCCGTGCTGCCTCGTGTTTCTCTCTATTCCGTGGATCTTTGTTGAGTATCCTGTTTTGAGAGACACTTCCAGCTTCCACTTCGATTTCGTCATCTTCGGGACCAACTCCTTCTGTGCATTCGCGCTGAATCTGGCCGTGTTTCTTCTTGTTGGGAAGACGTCTGCGTTGACCATGAATGTGGCCGGTGTTGTGAAGGATTGGTTGCTGATTGCGTTTTCGTGGTCGGTTATTAAGGACACCGTGACGCCGATAAATTTGTTCGGCTACGGGCTTGCGTTCCTCGGCGTGGCGTATTACAATCACTCGAAGCTGCAGGCGCTCAAGGCCAAGGAGGCGCAGAAGAAGACCGCGCAGGCAGATGAGGAGGAAGGGAGGTTGCTCGAGGACAGAGATGACAACAAGAGGAACGAACAGCAGACTTAA

Predicted protein sequences of Glyma04g07190

Limit To All Plant Sequences

>Glyma04g07190.1   sequence type=predicted peptide   gene model=Glyma04g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGGSLSDGVVKKIVLSYSYVAIWIFLSFTVIVYNKYILDKKMYNWPFPISLTMIHMSFCATLALLLVRVFRLVEPVSMSRDVYLSSVVPIGALYSLSLWLSNSAYIYLSVSFIQMLKALMPVAVYSIGVMLRKESYKNDTMLNMLSISLGVGVAAYGEARFDAWGVLLQLGAVAFEATRLVMIQILLTSKGISLNPITSLYYVAPCCLVFLSIPWIFVEYPVLRDTSSFHFDFVIFGTNSFCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGLAFLGVAYYNHSKLQALKAKEAQKKTAQADEEEGRLLEDRDDNKRNEQQT*

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