Glyma04g07180 - SoyBase

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Report for Sequence Feature Glyma04g07180

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5577294
stop:	5582291
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11170	AT	Annotation by Michelle Graham. TAIR10: DEAD/DEAH box RNA helicase family protein \| chr5:3553334-3556646 FORWARD LENGTH=427	SoyBase	E_val: 0	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0329	KOG	ATP-dependent RNA helicase	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7JB35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DEAD-box ATP-dependent RNA helicase n=1 Tax=Medicago truncatula RepID=G7JB35_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JUD5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07180

Paralog	Evidence	Comments
Glyma06g07280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g067600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07180

Limit To All Plant Sequences

>Glyma04g07180.4   sequence type=transcript   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGGCTTTCTATAAAATGGCCTCGTGCCCTTGAACCCTATCGTCACTCGCTCATCCACTGGAGGTTTCGCTCTCTCAGTTTCTTTTCCCCAAATTGTTTTTCATCTAACAATTTACTTTGCAGAACCCTAACCCTAGCCCCTTCGCCTACCTTGTAACCTTCCTTTCGATCCTTCATCTCGCAGTTGATTCGGTGATTTGCAGACAATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAGATTTTTTTGGGAGCAATGTTAGATGCTTGGTGGCATGAGTAATAGTGACGCATGGTAATTTGAACGGTGCAGCTGGATGATTAACCGGTGCTGATAGACACCAGAGTCTGTCTACAGACTGCCATTTTACCATTGGATATTTATCGGTATTATTAGATAGCAGCAGTGTAATGGCTTATGCATTTATGTGGTTTCACTTACTGTATCCTGTGTGGCAGCTACGCTGTTTTCATGAACGTCATGTTTTGAGTTAGTCTTACTGCGACTTTGATACTTGATACTTCTGTTGAATTCGATACGTGGTCTTCGATTTAAATTTCATAGTTTTTACTTCTCAGTCTATTCTTTCATTTAGCTATGAATTAATTTT

>Glyma04g07180.5   sequence type=transcript   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTAATACTTGTATCACAATCTTGTTTTGGAGAACTAAATTGCTTTGGTAACGCTTGAAAGCGTCAGAAAAAGGTTTATTTTACTTACACTCGGTTCCTTGGGCCCTGTTTTATTTGCTTCATCACCAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAGATTTTTTTGGGAGCAATGTTAGATGCTTGGTGGCATGAGTAATAGTGACGCATGGTAATTTGAACGGTGCAGCTGGATGATTAACCGGTGCTGATAGACACCAGAGTCTGTCTACAGACTGCCATTTTACCATTGGATATTTATCGGTATTATTAGATAGCAGCAGTGTAATGGCTTATGCATTTATGTGGTTTCACTTACTGTATCCTGTGTGGCAGCTACGCTGTTTTCATGAACGTCATGTTTTGAGTTAGTCTTACTGCGACTTTGATACTTGATACTTCTGTTGAATTCGATACGTGGTCTTCGATTTAAATTTCATAGTTTTTACTTCTCAGTCTATTCTTTCATTTAGCTATGAATTAATTTT

Coding sequences of Glyma04g07180

Limit To All Plant Sequences

>Glyma04g07180.3   sequence type=CDS   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAG

>Glyma04g07180.4   sequence type=CDS   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAG

>Glyma04g07180.5   sequence type=CDS   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAG

Predicted protein sequences of Glyma04g07180

Limit To All Plant Sequences

>Glyma04g07180.3   sequence type=predicted peptide   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGETKDEAYEEELLDYEEEDDKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS*

>Glyma04g07180.4   sequence type=predicted peptide   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGETKDEAYEEELLDYEEEDDKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS*

>Glyma04g07180.5   sequence type=predicted peptide   gene model=Glyma04g07180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS*

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