Glyma04g07160 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g07160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5568471
stop:	5571119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26660	AT	Annotation by Michelle Graham. TAIR10: SPX domain gene 2 \| chr2:11338932-11340703 FORWARD LENGTH=287	SoyBase	E_val: 2.00E-87	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1161	KOG	Protein involved in vacuolar polyphosphate accumulation, contains SPX domain	JGI		ISS
PTHR10783	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR	JGI		ISS
PTHR10783:SF5	Panther	XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR IDS-4	JGI		ISS
PF03105	PFAM	SPX domain	JGI		ISS
UniRef100_E5D6S7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SPX domain-containing protein 3 n=1 Tax=Phaseolus vulgaris RepID=E5D6S7_PHAVU	SoyBase	E_val: 6.00E-122	ISS
UniRef100_I1JUD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUD3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g07160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07160

Paralog	Evidence	Comments
Glyma06g07260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g067400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g07160

Limit To All Plant Sequences

>Glyma04g07160.3   sequence type=transcript   gene model=Glyma04g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTACTTCAGCATTAATATTCTAATTCCAGAACCTGAAGAATAGCATTTCTTTCCCTTTATTTACTTTTAATCTAATCCACTCAACTCCACTAATATCCTTGTGCAAAACTGAGTAACAGATCGATCATTAGTGTTGTTGCCATGAAGTTCTGGAAGATCCTGAAGAGCCAGATCGAGCAGACCCTGCCCGAGTGGCGTGACCAGTTCTTGTCCTACAAAGACTTAAAGAAACAGTTGAAGGTTATGTGTCCCAAAGATGCTCTAACTCCACCCTGTTTGGATGCTGACGAGCTTAACCACTTCCTTGGCCTCTTGGAGCTTGAGATAGATAAGTTTAACGGTTTCTTTGTGGACAAGGAAGAAGAATACATCATCAAATGGAAGGAGTTGCAAGACAGGGTTGCTAGAGCCATTGATTCAAACGCGGAGTTGATGTCACTAGGGAGGGAAATAGTGGATTTTCACGGGGAGATGGTTTTGTTAGAGAACTATACCGCACTCAACTACACAGGTCTAGTGAAGATAATAAAGAAATATGATAAGCGAACCGGTGCACTGCTTCGCTTGCCTTTTATCCAAGAGGTGCTGAACCAGCCCTTCTTCAAAATTGATGTGCTTAACAAGCTTGTAAAGGAGTGCGAGGTGATACTGAGTATTCTTTTCACCAACGACTGGTCTTCAATTAGTGAGGATTTTGAGGAAGACGAGTGTGGCTCCATGTCTGGAAATGAAAACAAAGAGACGCTGATGCACGTTCCAAAAGAACTTGATGAAATTGAAAACATGGAGAACACGTTCACCAAACTAACTTTATCAGCACTGCGTAGCTTGGAAGAAATTAGGGGTAGAAGCTCAACTGTTAGCATTTTCTCATTGCCTCCTTTGCATAACTAGGCTTTGCGATTGCAAGAGGATTGAAAAATAAAATAACTGCACTAGCCAATGCAACCAGAATAACATAGATCTTCTCGTGTTTATCTTCAAATCTCGTGTACTTAATGTTTATTAGAAAAGAAATAAACATAGAATTTAGACATGATTTGTCATTTATACAAGAGGATCCATTTCCCTGTCTCAATGGTAGATTTTCATATGAATCAAAAGAAGGATATCAATGCATACTAATCTATATTACCTTCATATATGGCTATTTCTTACTAGTATTGTTTAGTTTCTTAGGTATCCCCGTATCTATTGGGATAACTACGTTTGTTTATTCTATTTTTGTTTTTTGTTTTCATCCTTCTTGTTATTCGTTGCTTTGACCCGAATCAACTTTCCTTCTTTGTCCAAGTATTTTCTTGTATCTTTCTTTCCCTATTTG

Coding sequences of Glyma04g07160

Limit To All Plant Sequences

>Glyma04g07160.2   sequence type=CDS   gene model=Glyma04g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCTGGAAGATCCTGAAGAGCCAGATCGAGCAGACCCTGCCCGAGTGGCGTGACCAGTTCTTGTCCTACAAAGACTTAAAGAAACAGTTGAAGGTTATGTGTCCCAAAGATGCTCTAACTCCACCCTGTTTGGATGCTGACGAGCTTAACCACTTCCTTGGCCTCTTGGAGCTTGAGATAGATAAGTTTAACGGTTTCTTTGTGGACAAGGAAGAAGAATACATCATCAAATGGAAGGAGTTGCAAGACAGGGTTGCTAGAGCCATTGATTCAAACGCGGAGTTGATGTCACTAGGGAGGGAAATAGTGGATTTTCACGGGGAGATGGTTTTGTTAGAGAACTATACCGCACTCAACTACACAGGTCTAGTGAAGATAATAAAGAAATATGATAAGCGAACCGGTGCACTGCTTCGCTTGCCTTTTATCCAAGAGGTGCTGAACCAGCCCTTCTTCAAAATTGATGTGCTTAACAAGCTTGTAAAGGAGTGCGAGGTGATACTGAGTATTCTTTTCACCAACGACTGGTCTTCAATTAGTGAGGATTTTGAGGAAGACGAGTGTGGCTCCATGTCTGGAAATGAAAACAAAGAGACGCTGATGCACGTTCCAAAAGAACTTGATGAAATTGAAAACATGGAGAACACGTTCACCAAACTAACTTTATCAGCACTGCGTAGCTTGGAAGAAATTAGGGGTAGAAGCTCAACTGTTAGCATTTTCTCATTGCCTCCTTTGCATAACTAG

>Glyma04g07160.3   sequence type=CDS   gene model=Glyma04g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCTGGAAGATCCTGAAGAGCCAGATCGAGCAGACCCTGCCCGAGTGGCGTGACCAGTTCTTGTCCTACAAAGACTTAAAGAAACAGTTGAAGGTTATGTGTCCCAAAGATGCTCTAACTCCACCCTGTTTGGATGCTGACGAGCTTAACCACTTCCTTGGCCTCTTGGAGCTTGAGATAGATAAGTTTAACGGTTTCTTTGTGGACAAGGAAGAAGAATACATCATCAAATGGAAGGAGTTGCAAGACAGGGTTGCTAGAGCCATTGATTCAAACGCGGAGTTGATGTCACTAGGGAGGGAAATAGTGGATTTTCACGGGGAGATGGTTTTGTTAGAGAACTATACCGCACTCAACTACACAGGTCTAGTGAAGATAATAAAGAAATATGATAAGCGAACCGGTGCACTGCTTCGCTTGCCTTTTATCCAAGAGGTGCTGAACCAGCCCTTCTTCAAAATTGATGTGCTTAACAAGCTTGTAAAGGAGTGCGAGGTGATACTGAGTATTCTTTTCACCAACGACTGGTCTTCAATTAGTGAGGATTTTGAGGAAGACGAGTGTGGCTCCATGTCTGGAAATGAAAACAAAGAGACGCTGATGCACGTTCCAAAAGAACTTGATGAAATTGAAAACATGGAGAACACGTTCACCAAACTAACTTTATCAGCACTGCGTAGCTTGGAAGAAATTAGGGGTAGAAGCTCAACTGTTAGCATTTTCTCATTGCCTCCTTTGCATAACTAG

Predicted protein sequences of Glyma04g07160

Limit To All Plant Sequences

>Glyma04g07160.2   sequence type=predicted peptide   gene model=Glyma04g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFWKILKSQIEQTLPEWRDQFLSYKDLKKQLKVMCPKDALTPPCLDADELNHFLGLLELEIDKFNGFFVDKEEEYIIKWKELQDRVARAIDSNAELMSLGREIVDFHGEMVLLENYTALNYTGLVKIIKKYDKRTGALLRLPFIQEVLNQPFFKIDVLNKLVKECEVILSILFTNDWSSISEDFEEDECGSMSGNENKETLMHVPKELDEIENMENTFTKLTLSALRSLEEIRGRSSTVSIFSLPPLHN*

>Glyma04g07160.3   sequence type=predicted peptide   gene model=Glyma04g07160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFWKILKSQIEQTLPEWRDQFLSYKDLKKQLKVMCPKDALTPPCLDADELNHFLGLLELEIDKFNGFFVDKEEEYIIKWKELQDRVARAIDSNAELMSLGREIVDFHGEMVLLENYTALNYTGLVKIIKKYDKRTGALLRLPFIQEVLNQPFFKIDVLNKLVKECEVILSILFTNDWSSISEDFEEDECGSMSGNENKETLMHVPKELDEIENMENTFTKLTLSALRSLEEIRGRSSTVSIFSLPPLHN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain