SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G25370 | AT | Annotation by Michelle Graham. TAIR10: phospholipase D alpha 3 | chr5:8804240-8807547 REVERSE LENGTH=820 | SoyBase | E_val: 3.00E-97 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0046466 | GO-bp | Annotation by Michelle Graham. GO Biological Process: membrane lipid catabolic process | SoyBase | N/A | ISS |
| GO:0046470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylcholine metabolic process | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004630 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| PTHR18896 | Panther | PHOSPHOLIPASE D | JGI | ISS | |
| PTHR18896:SF11 | Panther | PHOPHOLIPASE D ALPHA | JGI | ISS | |
| UniRef100_I1K8V2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=2 Tax=Glycine max RepID=I1K8V2_SOYBN | SoyBase | E_val: 2.00E-143 | ISS |
| UniRef100_I1K8V2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phospholipase D n=2 Tax=Glycine max RepID=I1K8V2_SOYBN | SoyBase | E_val: 2.00E-143 | ISS |
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Glyma04g07130 not represented in the dataset |
Glyma04g07130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g07130.1 sequence type=CDS gene model=Glyma04g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTGCTAGATTTCAAGAAAAATGGCTTGATGGCAGCTCATGATCAAGAAACTGCTGATTACTTCAAAAACAAAAAGGTGAATTGTGTTTTGTGTCCACGGAACCCGGATGATGGGAAAAGCATAGTGCAAGTTGTTGACAGCCAAGTTGCTGGTGCTGCTACGGGACAACAAGGACAAAAGAGAACAATATTAAGTTTTGTAGGTGGCATTGATCTTTGTGATGGGAGATATGATATTCAGGAACATCCTCTATTTTCAACTTTGGATACAGTGCATAAAGATGATTTCCATCAGCCAAATTTCTCTGGTGCTTCCATCAAGAAAGAAGGGTCTGTTGCTTGGGATGTTTTGCTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGCTCCTATTCTCTTCAAGCAAGCTTGATGAGTACTTTGTCCCTCGATCCACGGTGGCAACAACAAATGAAAATGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGCTTCCCCCAAGATCCCGAAGACGCGGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCACTGATAGAAGCATTCATGATGCTTATATAAATGCTATTCGACGTGCCAAAAACTTTATCTACACTGAAAACCATTTCGTAAGGAGTTCACAT
>Glyma04g07130.1 sequence type=predicted peptide gene model=Glyma04g07130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAEEGVKVLMLVWDDRTSVLDFKKNGLMAAHDQETADYFKNKKVNCVLCPRNPDDGKSIVQVVDSQVAGAATGQQGQKRTILSFVGGIDLCDGRYDIQEHPLFSTLDTVHKDDFHQPNFSGASIKKEGSVAWDVLLNFQQRWEKQVGNQLLFSSSKLDEYFVPRSTVATTNENETWNVQLFRSIDGGAASGFPQDPEDAAELGLVSGKDNITDRSIHDAYINAIRRAKNFIYTENHFVRSSH
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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