Glyma04g07030 - SoyBase

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Report for Sequence Feature Glyma04g07030

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5445795
stop:	5451601
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g07030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32272	AT	Annotation by Michelle Graham. TAIR10: Nucleotide/sugar transporter family protein \| chr4:15577195-15579689 REVERSE LENGTH=344	SoyBase	E_val: 3.00E-98	ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
UniRef100_G7I713	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter n=1 Tax=Medicago truncatula RepID=G7I713_MEDTR	SoyBase	E_val: 7.00E-116	ISS
UniRef100_UPI000233A7E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A7E4 related cluster n=1 Tax=unknown RepID=UPI000233A7E4	SoyBase	E_val: 2.00E-149	ISS

Expression Patterns of Glyma04g07030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g07030

Paralog	Evidence	Comments
Glyma06g07120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g07030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g066200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g07030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g07030

Limit To All Plant Sequences

>Glyma04g07030.2   sequence type=CDS   gene model=Glyma04g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATGTTCATGTTGTTTTCTTTATGTATTGAGGCACTGGAGGATAATTTCTTTCATAGCAGGCGAATCAGTAATTATGGCAGATAACTCAAATGGATTTGTTCCACTGAGGACTTTGAAGCACACTCTTTCTTTGGCAGGAGCTTATTTACTTTACATGCTAGTCACCATGGAGTCTGTTCGTGGAGTAAATGTTCCTATGTACACCACCCTTAGGAGGACCACAGTGGTATTTACTATGCTTGTAGAAATTATGCTGGTGGGGCAGAGGTACTCACCTTCTGTCATTTTCAGTGTTAGCTTGATTGTCTTCGGTGCATTTGTTGTGGGAGCACGAGATTTATCCTTTGATGCCTATGGCTATGCCACTGTATTCCTGTCAAACATCACCACGGCTATATATCTTGCAACCATAGCCCGTGTTGGCAAAACTAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGGTGTCATATGTGGGCCCTTTTTGCTTTTCTGGACATTAGTTCGGGGTGACTTGAAGATGACACTCAATTTTCCTTACCTTCTTTCACCTAGTTTTATTGTTGTCTTGCTTTTTTCCTGCATCCTTGCTTTCTTCCTGAATTACAATATTTTTCTGAACACTACTCTCAATTCAGCTGACACAGACAAAATGTGGTAA

Predicted protein sequences of Glyma04g07030

Limit To All Plant Sequences

>Glyma04g07030.2   sequence type=predicted peptide   gene model=Glyma04g07030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCSCCFLYVLRHWRIISFIAGESVIMADNSNGFVPLRTLKHTLSLAGAYLLYMLVTMESVRGVNVPMYTTLRRTTVVFTMLVEIMLVGQRYSPSVIFSVSLIVFGAFVVGARDLSFDAYGYATVFLSNITTAIYLATIARVGKTSGLNSFGLMWCNGVICGPFLLFWTLVRGDLKMTLNFPYLLSPSFIVVLLFSCILAFFLNYNIFLNTTLNSADTDKMW*

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