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Report for Sequence Feature Glyma04g07020

Feature Type:gene_model
Chromosome:Gm04
Start:5443035
stop:5445104
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g07020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32270AT Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:15575015-15576360 REVERSE LENGTH=239 SoyBaseE_val: 5.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR14942Panther FAMILY NOT NAMED JGI ISS
UniRef100_G7I716UniRef Annotation by Michelle Graham. Most informative UniRef hit: U11/U12 small nuclear ribonucleoprotein 25 kDa protein n=1 Tax=Medicago truncatula RepID=G7I716_MEDTR SoyBaseE_val: 1.00E-53ISS
UniRef100_UPI0002339995UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339995 related cluster n=1 Tax=unknown RepID=UPI0002339995 SoyBaseE_val: 4.00E-161ISS

Expression Patterns of Glyma04g07020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g07020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g066100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g07020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g07020
>Glyma04g07020.2   sequence type=CDS   gene model=Glyma04g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAGAGAAGGTTGATGATTGTTTCTCACGAAATCCCTCAGCGATCTCTCAGCATGCACTACGTAGATACCAGTTTTTTCAACGATAGGTTTCATTCCGAAACGCTCATCCTCTCCATCCTCAAATTGGATGCCTCTTCCTTCCGTAATATTATAACTTGCTTCTCTTTCTTTCTTTCTTTCTTCTTTTCCTTTGTGATCAAGAAACATGTTGAAGTTGCAAATGCAGCAACTGTTGCAGAACTTAAGCAAGCGGTGGAGGCAGTTTTCTGTCGCGTGCCTCAGAAGGGACCGGGAAAAATATTATGGCCACTTGTCTGGCGACAATTCTGCTTAAGCTATCAAGGACAGAAATTAGTCTCGGAATCGGATTATATTAGAGATTTTGGCATCGAGGATGGTGACCAGCTTCATTTCGTGCACCATGTATCTGACACTTGCAGTTTCGAGGGAAAGCAGTCCAAGAAACAAGCTGTCAATTTGAAACAACACAGGAGGTCATCGTCAAAAGTCAATAGATATCAACAGAAAGAACATAACGATGACAACGACATTGGTTTGCATGATATAGTCATAGAGAATGCGAAGATCCGGAATTGCAATAATGCAGAAGAAAATGGAGGAAAGCTAAGCTTACCTGGCTTTTTGGGAGGGTTGTTCTCACACAGCCGGCTGGCAGTTGTGAGCAGAGCTAGAATTGAGGGCAGGATTTGCTGCTCAATGATGCTTAGATGTATAGTGAGCAATTTTAGAAAAATTACAAGAATTTTACGCTATTGCAGAAGGCAGCATTACTCTCGGAGACCCACATGGAGAGAATATTGA
Predicted protein sequences of Glyma04g07020
>Glyma04g07020.2   sequence type=predicted peptide   gene model=Glyma04g07020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGERRLMIVSHEIPQRSLSMHYVDTSFFNDRFHSETLILSILKLDASSFRNIITCFSFFLSFFFSFVIKKHVEVANAATVAELKQAVEAVFCRVPQKGPGKILWPLVWRQFCLSYQGQKLVSESDYIRDFGIEDGDQLHFVHHVSDTCSFEGKQSKKQAVNLKQHRRSSSKVNRYQQKEHNDDNDIGLHDIVIENAKIRNCNNAEENGGKLSLPGFLGGLFSHSRLAVVSRARIEGRICCSMMLRCIVSNFRKITRILRYCRRQHYSRRPTWREY*






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