Glyma04g06980 - SoyBase

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Report for Sequence Feature Glyma04g06980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5400916
stop:	5409836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32160	AT	Annotation by Michelle Graham. TAIR10: Phox (PX) domain-containing protein \| chr4:15529056-15532892 FORWARD LENGTH=723	SoyBase	E_val: 0	ISS
GO:0007154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell communication	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
PTHR10555	Panther	SORTING NEXIN	JGI		ISS
PTHR10555:SF65	Panther	PHOX (PX) DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00787	PFAM	PX domain	JGI		ISS
UniRef100_F4JTJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phox (PX) domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JTJ2_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A66A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A66A related cluster n=1 Tax=unknown RepID=UPI000233A66A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06980

Paralog	Evidence	Comments
Glyma06g07080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g065700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06980

Limit To All Plant Sequences

>Glyma04g06980.2   sequence type=transcript   gene model=Glyma04g06980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGATGCTGTTTTACAGAAGACGACAGTTAGGTGTAGCTGTTTCTTTAACTTTCTCCTTTTTTTCTCCCTCAATTGAGTCCCAAAGCAAACGCACTACACTCTACAGTATAGAGAGAGCACCACAACACAATACGAGATGAGAATTGTTTTTTCATTGGATAGAACACGTGTACACTATACATAAAACAAACGCACTGCGCTCGTGGCTTTTCTTAGCCACGTTGCCGCTTCTACTCTTAACGTGCGCCCCTCCACCGTACCCACCACGGCACAGATTCCGCCTTGTCCGATCCGATCGGCGAAACCCTTGTCCTCGGCGGTGCCGTCACTCTCATAATCCCGATTCCTACCACTGAGCTCAGATAATCATATTATGATCTTCAAATTGTAGAGAGACAGAGAATTCTAGGCTGTGACGACGACGACGAAGAAGATGCAGAGACGAAGTCCTCCGAAGCACAGGCACGACGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGCCCTGCGCCTCGAAAATGGGCATTGAAATCTGATAGGGTATCAAAGTCTGTAGCCCATTTCTATTGCTTTTGTGGTTTGTGGAGGGGATCTCAACCATTTCCATAGTTTCCTTCGTGTATTGCCTAGTTCGGCTGGCATCTATGGAGGGGAGTCTCAGAAAGTCCCACATACCCCTGCCTTAATGGAGTGTGGTTGATATTCTTATTTCTGTTGCTTTTCTGGTTTTGTGGAGGTGATCTCTACCATTTCTGTAGTTTCCTTCGTGTATTGCCTAGTCCAGCAAGTATCTATGGAGGGGAGTGTTGGAAGGTCCCACATTCTTGTCTTAATTAATGGAGTGTGGTTGATATTCCTATTGTGTAACTTCACTTAATTTCAATTGATTTTAAGAGGAAATCTAACAGAGTATCAAAGCCTATAGCCCATTTCCATTGCTTTTGTGGTTTGTGAAGGGGATCTCTATGGTTTTCATAGTTTCCTTTGTGTATCACTTAGTCCAGCAGCCATCAATGGAGAGTAGTTCCCCTATTGTACAGAATGGGCGAGATACAGTGTGGCCACACAATCATCTTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAAGGTCCATGGAGTCTTGAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATATTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCACCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAGGAGTGGATCACCAAACTATTATCTGACATTGATATATCACGATGTGCTGCCGTGGCGTCATTTCTTGAACTAGAAGCAGCTGCTAGATCTTCATTCCAAGATGCAAGCCAGCAGAATTCTGAAACAGACCCCGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGTTTATCATTATTCGCTGGCAGTTCATCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAGCCATCTGACCTAGGAACACCAAGAATTGGACGGGACGATAATTCTGAAGTTGGCACAGATGATCTAACATTAGATGAAGATATGACGAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGACGAAGGTTTGTTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGCAAATGCCAGACATGTGAACTATGCTGCAGAAAAGGTAAAAAATAATGGTAATGTATATGATTCCTCACTTTTAGCTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCTAAGGTTGTTGCTCATGTTCGTAAGCTTTCAAGTGAGAGTGTTGGAAGTGATGGAAGCTCAATACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAATTCATCTGGTGATGGCTCTCATGACCTTCCTGGATCTGCTTTGGTTTCAAGAGAGACAGATATTATGGGCCACACAAAGTTGAAGTCTACTGGTGATACTCAATTAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAGCGAAGGCTAGGCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTGCAACAAAGGTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATTGAGAGAGAAAGGTTTACTCAAATGCAGTGGAATATGGAGGAACTTAGACGACAATCATTGGAAATGGAGATAAAACTAAAGTCTGAATTGGGGCGAAATTCTTATCAGGATTTGACAAAGGAATCAATTGTTCAGCAGAATGATGTACTGTTGGAGAATTTAGATGCTACTAAGGAGCAGCTGGAAATTTTGTCAAAACAGTATGGAGAGCTAGAAGCCAAATCCAAAGCAGATGTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTCCGTAATTCCCAAACAAAGTTAAAGAAAGAACTTAGTGAGTCTATAAAGGAACACAGTGAAACTGAGAAACTACTTCTGCACGAAAGAGAGAAGAGGGAGCAGGCAGAAGTGGCTCGGAGAATACTGCTGGAGAAATGCAGGGTTCTTTTCAACCAGCTTCAAGAGTGCAATGTCAGTCTTCCTTACGAATACGAAGGTAGGACAATTGTGAATTCATCATCATCAACTGATGCTTTTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAAACGAATGACATAAAAGATGGTGTAATCTGTGATGATGAAGTGAGAAAGATCATAGCAGATTTGTTCATCGATAATGTTAGATTGAGAAAACAGACAAACCGCGTCACAAGGCATGCCCTCAAATTGGATATGACAGCAAGTGATGATTCCCCTTCAGTGGAAACTGTAACAAGTATTGAGAAATATATGTGAAGTGCTAATATATATATTGTTCTTCGGCTTTTGACCAAGAGCCCACTGTTTCTTATCCCGGTGGATGATCATTTGCCGTTCCCAATAGGTGAGTTAATATACTGAGTGCAGTAGCTCCCCTAATGTATTTCAACTTGTACTACGAGTTTTTACTTTACACACGTATACGAGCCTTGCACCACATTTTTTTATGAACTTAAAATAATGAAAAGCCGGAACTCATCAAAGGTAAAATTATGTCTACTCTTGCTTTTTTATTTTTCGTTACCATTTTTTATTAATAAAACACATTTTATAGCTGTGGTCATGGAGAAGCACTGGCAGCAGTGTGGGGG

Coding sequences of Glyma04g06980

Limit To All Plant Sequences

>Glyma04g06980.1   sequence type=CDS   gene model=Glyma04g06980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAGACGAAGTCCTCCGAAGCACAGGCACGACGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGCCCTGCGCCTCGAAAATGGAATGGGCGAGATACAGTGTGGCCACACAATCATCTTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAAGGTCCATGGAGTCTTGAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATATTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCACCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAGGAGTGGATCACCAAACTATTATCTGACATTGATATATCACGATGTGCTGCCGTGGCGTCATTTCTTGAACTAGAAGCAGCTGCTAGATCTTCATTCCAAGATGCAAGCCAGCAGAATTCTGAAACAGACCCCGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGTTTATCATTATTCGCTGGCAGTTCATCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAGCCATCTGACCTAGGAACACCAAGAATTGGACGGGACGATAATTCTGAAGTTGGCACAGATGATCTAACATTAGATGAAGATATGACGAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGACGAAGGTTTGTTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGCAAATGCCAGACATGTGAACTATGCTGCAGAAAAGGTAAAAAATAATGGTAATGTATATGATTCCTCACTTTTAGCTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCTAAGGTTGTTGCTCATGTTCGTAAGCTTTCAAGTGAGAGTGTTGGAAGTGATGGAAGCTCAATACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAATTCATCTGGTGATGGCTCTCATGACCTTCCTGGATCTGCTTTGGTTTCAAGAGAGACAGATATTATGGGCCACACAAAGTTGAAGTCTACTGGTGATACTCAATTAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAGCGAAGGCTAGGCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTGCAACAAAGGTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATTGAGAGAGAAAGGTTTACTCAAATGCAGTGGAATATGGAGGAACTTAGACGACAATCATTGGAAATGGAGATAAAACTAAAGTCTGAATTGGGGCGAAATTCTTATCAGGATTTGACAAAGGAATCAATTGTTCAGCAGAATGATGTACTGTTGGAGAATTTAGATGCTACTAAGGAGCAGCTGGAAATTTTGTCAAAACAGTATGGAGAGCTAGAAGCCAAATCCAAAGCAGATGTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTCCGTAATTCCCAAACAAAGTTAAAGAAAGAACTTAGTGAGTCTATAAAGGAACACAGTGAAACTGAGAAACTACTTCTGCACGAAAGAGAGAAGAGGGAGCAGGCAGAAGTGGCTCGGAGAATACTGCTGGAGAAATGCAGGGTTCTTTTCAACCAGCTTCAAGAGTGCAATGTCAGTCTTCCTTACGAATACGAAGGTAGGACAATTGTGAATTCATCATCATCAACTGATGCTTTTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAAACGAATGACATAAAAGATGGTGTAATCTGTGATGATGAAGTGAGAAAGATCATAGCAGATTTGTTCATCGATAATGTTAGATTGAGAAAACAGACAAACCGCGTCACAAGGCATGCCCTCAAATTGGATATGACAGCAAGTGATGATTCCCCTTCAGTGGAAACTGTAACAAGTATTGAGAAATATATGTGA

>Glyma04g06980.2   sequence type=CDS   gene model=Glyma04g06980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTCATAGTTTCCTTTGTGTATCACTTAGTCCAGCAGCCATCAATGGAGAGTAGTTCCCCTATTGTACAGAATGGGCGAGATACAGTGTGGCCACACAATCATCTTACTGGTTGGAGTTATTGTGTCACAATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAATTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGAAGGGATTACAAAGGTCCATGGAGTCTTGAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATATTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCACCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTGCTCTTTGGAGGAGTGGATCACCAAACTATTATCTGACATTGATATATCACGATGTGCTGCCGTGGCGTCATTTCTTGAACTAGAAGCAGCTGCTAGATCTTCATTCCAAGATGCAAGCCAGCAGAATTCTGAAACAGACCCCGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGTTTATCATTATTCGCTGGCAGTTCATCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAGCCATCTGACCTAGGAACACCAAGAATTGGACGGGACGATAATTCTGAAGTTGGCACAGATGATCTAACATTAGATGAAGATATGACGAATCCAATAGAAAAGCTTGTGAAATATGGCATATCAAATATTGACGAAGGTTTGTTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGCAAATGCCAGACATGTGAACTATGCTGCAGAAAAGGTAAAAAATAATGGTAATGTATATGATTCCTCACTTTTAGCTAATAATACCATGGAGCTTTTCTCTGAGCCTGGGCATGCTAAGGTTGTTGCTCATGTTCGTAAGCTTTCAAGTGAGAGTGTTGGAAGTGATGGAAGCTCAATACGAGGTAGTGACATGTCTAATTTTGGGATTCCAAATTCATCTGGTGATGGCTCTCATGACCTTCCTGGATCTGCTTTGGTTTCAAGAGAGACAGATATTATGGGCCACACAAAGTTGAAGTCTACTGGTGATACTCAATTAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTCAACCATGCAGCGAAGGCTAGGCACTGCAAAAACTGATATGGAGGACCTTATAGTTAGATTAAATCAAGAAATAGCTGCAAAGGATTTTCTTGCAACAAAGGTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATTGAGAGAGAAAGGTTTACTCAAATGCAGTGGAATATGGAGGAACTTAGACGACAATCATTGGAAATGGAGATAAAACTAAAGTCTGAATTGGGGCGAAATTCTTATCAGGATTTGACAAAGGAATCAATTGTTCAGCAGAATGATGTACTGTTGGAGAATTTAGATGCTACTAAGGAGCAGCTGGAAATTTTGTCAAAACAGTATGGAGAGCTAGAAGCCAAATCCAAAGCAGATGTTAAAGTTCTGGTTAAAGAGGTCAAATCTCTCCGTAATTCCCAAACAAAGTTAAAGAAAGAACTTAGTGAGTCTATAAAGGAACACAGTGAAACTGAGAAACTACTTCTGCACGAAAGAGAGAAGAGGGAGCAGGCAGAAGTGGCTCGGAGAATACTGCTGGAGAAATGCAGGGTTCTTTTCAACCAGCTTCAAGAGTGCAATGTCAGTCTTCCTTACGAATACGAAGGTAGGACAATTGTGAATTCATCATCATCAACTGATGCTTTTAATCAATTAACGACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTAGAAAACTTAGAGAAGGACTACGGAAGTGCAGCTTGCAATGTAGATAAAACGAATGACATAAAAGATGGTGTAATCTGTGATGATGAAGTGAGAAAGATCATAGCAGATTTGTTCATCGATAATGTTAGATTGAGAAAACAGACAAACCGCGTCACAAGGCATGCCCTCAAATTGGATATGACAGCAAGTGATGATTCCCCTTCAGTGGAAACTGTAACAAGTATTGAGAAATATATGTGA

Predicted protein sequences of Glyma04g06980

Limit To All Plant Sequences

>Glyma04g06980.1   sequence type=predicted peptide   gene model=Glyma04g06980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHNHLTGWSYCVTIPSWAFVPKSRNSDPIVFYRVQVGVQSPEGITKVHGVLRRFNDFLKLFADIKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYAAEKVKNNGNVYDSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHDLPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSLEMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAACNVDKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHALKLDMTASDDSPSVETVTSIEKYM*

>Glyma04g06980.2   sequence type=predicted peptide   gene model=Glyma04g06980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFIVSFVYHLVQQPSMESSSPIVQNGRDTVWPHNHLTGWSYCVTIPSWAFVPKSRNSDPIVFYRVQVGVQSPEGITKVHGVLRRFNDFLKLFADIKKEFPRKNIPPAPPKGLLRLKSRALLEERRCSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLFAGSSSVASDYGSDTAYEPSDLGTPRIGRDDNSEVGTDDLTLDEDMTNPIEKLVKYGISNIDEGLFMGQTILEQLEGLPRHKANARHVNYAAEKVKNNGNVYDSSLLANNTMELFSEPGHAKVVAHVRKLSSESVGSDGSSIRGSDMSNFGIPNSSGDGSHDLPGSALVSRETDIMGHTKLKSTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLIVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWNMEELRRQSLEMEIKLKSELGRNSYQDLTKESIVQQNDVLLENLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTKLKKELSESIKEHSETEKLLLHEREKREQAEVARRILLEKCRVLFNQLQECNVSLPYEYEGRTIVNSSSSTDAFNQLTTSDDQMDILLAEVENLEKDYGSAACNVDKTNDIKDGVICDDEVRKIIADLFIDNVRLRKQTNRVTRHALKLDMTASDDSPSVETVTSIEKYM*

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