Glyma04g06960 - SoyBase

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Report for Sequence Feature Glyma04g06960

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5375551
stop:	5383857
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25320	AT	Annotation by Michelle Graham. TAIR10: TRAF-like family protein \| chr2:10781951-10788065 REVERSE LENGTH=1673	SoyBase	E_val: 0	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG1987	KOG	Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains	JGI		ISS
PTHR24007	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24007:SF24	Panther		JGI		ISS
PF00917	PFAM	MATH domain	JGI		ISS
UniRef100_G7JAH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CGS1 mRNA stability n=1 Tax=Medicago truncatula RepID=G7JAH0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06960

Paralog	Evidence	Comments
Glyma06g07050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g065500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06960

Limit To All Plant Sequences

>Glyma04g06960.1   sequence type=CDS   gene model=Glyma04g06960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAAGCTTCGTCGGAGGCAGTTCCGTCGCTTTCCTCGGCGCCGTCGTTCACGGAGGCGGCGACATCGTCGACGTCGTCCGCGGCAGCGGCGGAGGACCTGGCGGTGGGGTCGCGGGACGGAGGCGGCGGCGCGCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCGGCGGTGTGCCGATGGACGGTGCATAATTTCCCTCGAATAAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATACCCCAAGGGTGACTCACAGGCGCTGCCTGGTTACATCTCCATTTACCTCCAAATCATGGACCCTCGCGGCACCTCTTCCTCCAAATGGGACTGTTTCGCCAGCTATCGTTTGGCAATCGTCAACCTCGCCGACGATTCCAAAACCATTCACCGCGATTCCTGGCACCGATTCTCCAGCAAGAAGAAATCCCACGGCTGGTGCGATTTCACGCCCTCCAACACTGTTTTCGACCCCAAATTGGGTTACCTCTTCAACACCGATTCTGTTTTGATCACCGCCGATATTCTCATCCTCAACGAGTCCGTCAATTTCACGCGCGACAACAATGAGGTGCAATCCTCGTCTTCCTCGTCCTCCAGTGCGATGACTTCCTCCGTGGTCGCGAGTCCCGTCTCTGATGTTTCCAGTGGGAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGCCCGGTTTTCCCTGCGGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCCGTCAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGACACGGATAAGAGTGTGGTGTTGTCTGATAGAAGTTGCTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCATAGGGATTCTTATGGGAGGTTTGCTGCGGATAACAAGAGTGGTGACAATACCAGCTTGGGGTGGAATGATTATATGAAGATGTTGGATTTCATTGACGCGGATTCGGGGTTCTTGGTGGATGACACTGCGGTTTTCAGCACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTGATTGCCGGGAGGAGTGGGAGTGGTGCAAGGAAGTCTGATGGACATGTTGGAAAGTTCACTTGGAGGATTGAGAATTTTACTAGGTTGAAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACTGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTAAGTCATCGTTTGTCAGTTGTGAACCAAAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGGTACTCTAAAGCTGCGAAGGATTGGGGTTGGCGTGAATTTGTGACACTTACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCCGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATATTACTGAGAACGATTCCGAGTTAAGCAGCAGTGGTTCCCCAGTTGATAAAAGAAGTTCATTTACATGGAAAGTGGAGAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGCTGTGAACTTCGGATTGGTGTATATGAGTCGTTTGACACCATATGTATTTATTTAGAGAGTGACCAGGCTGTTGGTAGTGACCCGGATAAAAATTTCTGGGTCAGATACAGGATGGCAGTTGTGAATCAAAAAAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATCTGCACAAAGACATGGAATAATTCAGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGGTTTTAGCATCAGAGGATGATCAGGATGCATTGACTACTGATCCTGATGAGCTCATAGACTCTGAAGACAGTGAAGGGATAAGTGGAGACGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCGATTGCGGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTTAAGCGTCTGCTTCTACCTACCAAGCTCTCTGGCAGTTGTGATGGGAAGAAGGCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGTTGCCAACCTTCCGAAGTGGGTCCTGTTGCTGATTCTGTTGATGCATGCTCTAAACCTTCTCCAAATGGAAGTGGAGCTGCAAGTCCTCTTGAGTGTGAAAGAGAAAATGGAGCAATGGAGTCTGCACGAGTCCCCGTATGTGAGAGGTTGGATTCTGTTGTTCAAGAAAGCAGTAATGCATCTGCTGTGCAGAGCTCTGATTTAAAAGGCAATGGTATTCAGGAAAAAGCACTTCCTGGACAGCCCATTTGTCCACCAGAAACATCTGCCACTGCGTCAGAAAATGCATCCCTTCGTTCAAAGACCAAGTGGCCAGAACAGTCCGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCTGTTTATGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTGTGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGATGAACCCCTAACTGCAACAATAAATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGATCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCACCTTGCGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGACGATGATTGTGGTGACAGTTGCTCGGCTTTGCCATGTGGGATTTTCTTATTTGGTGAACATGGCACTGCTCCCAGTGGATTGCATGTGATTGATGAGCAGGCTTATCATGCTAGTCGTCACTTTTCTGATATTTATATACTGTTTGAAATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCCCAGTCTGTAACCCTAGTATTACAAAGCCGTCTTTCCCAAAGATTGAACAATAATGGCAGCTATGCTTCTGAAAATTTCCAGCATTCAGATGGTGCTACAGAGGGAGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGATTACACTTCTGTTCTTGGTCTTGCTGAAAATTTGGCCCTCTCTAAAGACCCATGCGTGAAAGAATTTGTGAAACTTCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTCATCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACGGACAATGGTCGTGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTAGCTGAACTTGCAAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCCAGTGAAGATGAAATTGTGCGTGTTCGTGAAGAAAGCAAAAATGAGATTTCTAATATGGCTAAGGAAAAAGTTATGATATCGCAAAAGCTGAGTGAATCTGAGGCCACAAACAATCGCTTGAAGTCTGAAATGAGGACTGAGATGGATCGGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACAAATTCAAGAAGTTGAGAGTCAGCTTGAATGGATCCGCTCAGAACGGGATGATGAAATCGCAAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTACATGATGCAGAGACACAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCTCTTGCTGAAAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGACGAAGAACTGAAAAGATTTGCAACAGAGAATGTGACCCGGGAAGAAATCCGGCAATCACTCGAAGATGAAGTTCGTAGATTGACTCAAACAGTTGGGCAAACTGAAGGGGAAAAGCGGGAGAAGGAAGAACAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGACATGCCCCTCTATATGGTGCTGGTCTGGAGGCTTTATCATTGAAAGAGTTGGAAACACTATCACGTATTCATGAAGATGGGCTTAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCTGCCGGGAGCCCTCTTGTGAGTCCCCATGCTCTCCCTCACACCCATGGATTATATCCAACTGCGGCCCCCCCAATGGCCGTGGGTCTGCCTCCCTCAATAATCCCAAATGGTGTAGGGATCCACAGCAACGGCCATGTGAATGGTGGTGCAGTTGGACCCTGGTTTAATCACTCTTGA

Predicted protein sequences of Glyma04g06960

Limit To All Plant Sequences

>Glyma04g06960.1   sequence type=predicted peptide   gene model=Glyma04g06960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQASSEAVPSLSSAPSFTEAATSSTSSAAAAEDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNLADDSKTIHRDSWHRFSSKKKSHGWCDFTPSNTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNEVQSSSSSSSSAMTSSVVASPVSDVSSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKSVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMLDFIDADSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHVGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDITENDSELSSSGSPVDKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPNGSGAASPLECERENGAMESARVPVCERLDSVVQESSNASAVQSSDLKGNGIQEKALPGQPICPPETSATASENASLRSKTKWPEQSEELLGLIVNSLRALDGAVYGALSQLECGSEVWERILFQSFELLTDSNDEPLTATINFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDCGDSCSALPCGIFLFGEHGTAPSGLHVIDEQAYHASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVTLVLQSRLSQRLNNNGSYASENFQHSDGATEGDACEQLGVQRDDYTSVLGLAENLALSKDPCVKEFVKLLYMIMFRWFANESHRGRMLKRLVDRATSNTDNGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIVRVREESKNEISNMAKEKVMISQKLSESEATNNRLKSEMRTEMDRFSREKKELAEQIQEVESQLEWIRSERDDEIAKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHALQQRKGSPAGSPLVSPHALPHTHGLYPTAAPPMAVGLPPSIIPNGVGIHSNGHVNGGAVGPWFNHS*

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