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Report for Sequence Feature Glyma04g06890

Feature Type:gene_model
Chromosome:Gm04
Start:5321800
stop:5326248
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25290AT Annotation by Michelle Graham. TAIR10: Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
KOG4151 KOG Myosin assembly protein/sexual cycle protein and related proteins JGI ISS
PTHR22904Panther CHAPERONE BINDING PROTEIN JGI ISS
PTHR22904:SF25Panther TPR REPEAT CONTAINING PROTEIN JGI ISS
PF00564PFAM PB1 domain JGI ISS
UniRef100_E5GCC3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein 70 n=1 Tax=Cucumis melo subsp. melo RepID=E5GCC3_CUCME SoyBaseE_val: 0ISS
UniRef100_I1JUA6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUA6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g06890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06890
ParalogEvidenceComments
Glyma06g06971 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g064900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g06890
>Glyma04g06890.1   sequence type=CDS   gene model=Glyma04g06890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGCCCACGGGGAAGAAGAAGGGTACCGTTACTCCAGGCGCTGCAAATTCACACGCCAAGCACGGAAAATCTTCCAAAGCCTTCGATGAAGACACGGCGGTGTTCATCACCATGTCACAAGAGTTCAGGGAAGAAGGCAACAAGTTGTTTCAGAAGAAGGACCACGAAGGCGCCATGCTCAAGTATGAGAAGGCTCTGAAGCTTCTCCCGAACAACCACATCGATGTCGCGCACCTTCGCACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAGTACCCTCGAGCAATTCACCAATGCAATTTGGCGCTGGAAGTGTCTCCGAGATACAGCAAAGCTCTATTGAAAAGAGCCACCTGCTATCGTGAGCTCAATCGCTTCGATTTGGCGCTCAGGGATGTTCAACTTGTTTTGGGCATGGAGCCTAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCGGAAAGTCAACGGAAGAAAAAGGGGTCTCTGTTGATGATAAAGGAGTGGCTTTTGATGCTACTGTTCATCACTCTCCAGCTCCTTCTTCGCAAAAACTGAAGAAAAAGAGAGGTAAAAAAACTGAGGACAACAAGGTGGTTGCGGAGGAAAAAGGGTTGAGTAGTAGTGTTGAGGACAAGGTGAGTTGTGTTGGGGACAAGGTGGTTGTTGTGGAAAAAGTGAGTAGTGTTGAGGATAAACAAGTGGTTTCGAAAACGATTGAGCAAGGGAAAAGGGTGGTGGAACCTGTGGAGGAAGAAAAAACTGTCACAATCACTAGGAGTGTGAAGTTGGTGTTTGGTGAGGATATAAGGTGGGCAGAGTTACCCGTGAATTGTAGTGTGAAGCTGGTGAGGGATATAGCTAGGGATCGGTATCCAGGTTTGAAGGGTGCTCTTGTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACTACTACTGATGAACTGCGGCTAGCTGAAAAATCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACCGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAAATGGAACAACCAATGGGGATGAAGTGCGAAGGGGCGATGGAAAACCGAGTGATGGTGCTGAGAATGGAGATATGGAAGAAGGAAAAGATAAAGATGTGGTGAAAAGGATGGTTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGATGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTATGCAATGAAGCTGTATGAAGAAGCAATAGAGGATTCAGTGGCAAGCAATGATGCTCAAGAACTTTTTAGAATGGCTGCGGATAAATTTCAAGAGATGGCTGCTTTGGCTTTGTTTAATTGGGGTAGTGTTCAGATGTCCCTGGCAAGGAACCAAGGTTTCTTTTTGGAGGATGGGGCAAGAGAGTCTTCCTTGGAGCATATAAAAGCTGCATATGAATTGGCACAAAAGGAGTATGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGGGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCAATGGCATGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTTAAACTTTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTCTCCAAGATATTTCTGATAATGAAGCTTCAAAGCAAGCTACAAAGATGAGGTCTCAGATACATCTTTTGTGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTCGAAAAGTTTGAACTAGCTGGGACTTCTGCAACGGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGATTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCCCAAGGGTGGCAGTTTGGTGATCCATCATTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTACAACTTGGAGCAATTTTAA
Predicted protein sequences of Glyma04g06890
>Glyma04g06890.1   sequence type=predicted peptide   gene model=Glyma04g06890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKPTGKKKGTVTPGAANSHAKHGKSSKAFDEDTAVFITMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPNNHIDVAHLRTNMATCYMQLGLGEYPRAIHQCNLALEVSPRYSKALLKRATCYRELNRFDLALRDVQLVLGMEPNNLTALELLESLGKSTEEKGVSVDDKGVAFDATVHHSPAPSSQKLKKKRGKKTEDNKVVAEEKGLSSSVEDKVSCVGDKVVVVEKVSSVEDKQVVSKTIEQGKRVVEPVEEEKTVTITRSVKLVFGEDIRWAELPVNCSVKLVRDIARDRYPGLKGALVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGNGTTNGDEVRRGDGKPSDGAENGDMEEGKDKDVVKRMVTVEDWLLQFARMFKNHVGFESDSYLDTHEYAMKLYEEAIEDSVASNDAQELFRMAADKFQEMAALALFNWGSVQMSLARNQGFFLEDGARESSLEHIKAAYELAQKEYEKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKKDLEAGFSDEVLKLYNKAEDSMEKGILMWEEIEEQRLNGISKSDKYKEQLEKMGLDSLLQDISDNEASKQATKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHYNLEQF*






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