Report for Sequence Feature Glyma04g06880
Feature Type: gene_model
Chromosome: Gm04
Start: 5317833
stop: 5320661
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32060 AT
Annotation by Michelle Graham. TAIR10: calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498
SoyBase E_val: 6.00E-156 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005509 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium ion binding
SoyBase N/A ISS
PTHR12294 Panther
EF HAND DOMAIN FAMILY A1,A2-RELATED
JGI ISS
PTHR12294:SF1 Panther
gb def: cg4704 gene product [drosophila melanogaster]
JGI ISS
PF00036 PFAM
EF hand
JGI ISS
UniRef100_B9RP01 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calcium ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RP01_RICCO
SoyBase E_val: 5.00E-172 ISS
UniRef100_I1JUA5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUA5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06880
Paralog Evidence Comments
Glyma06g06960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g064800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06880
Coding sequences of Glyma04g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06880.2 sequence type=CDS gene model=Glyma04g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCCTGTGGACCTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCATCAGAATCCAAACTTGTAAGAGAGGGATACTTGAATGGTGAAAGAAGTCCTGGCCATTTATTCTGTCTCCCTTCAGAATTTTTTATGCTTTTTGATGTAGACAACGACGGACTTATATCTTTCAAAGAGCATATCTTTTTTGTAACTCTGCTTAGCATCCAAGAATCAAGTTTTTCTGCGGCATTTAGGATGTTTGACAAGGATAATGACGGGGAGATAGATAAGGAAGAATTCAAGAAAGTTATGCAATCAATGCGATCTCATACCAGACAAGGTGTTCAACACAGGGATGGACGACGAACTGGCCTAAGGGCCAATGCTTCTGTAGAAAATGGAGGGCTGATGGAATACTTATTTGGTAAAGATGGAAACGGACGCCTCACACACGATAAATTTGTGCGGTTTATAAGAGACTTGCATGATGAAATTGTGAGGCTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACTATACCGGCCAAGGACTTTGCACACTCCATTGTTGCTTCTGCCGACTTGAGTCATCTGGGCAGGTTGCTTGAACGGGTTGATGAATTGAGCAATGATCCACGGTTTAGGGATGTACGCATAACATTTGACGAGTTCAAAAATTTTGCAGAGCTGAGGAAAAAATTATCACCATTTTCATCAGGCATTTTCAGTTTTGCAGAAGTACAAGGCCTGTTAACAAGAGATGATTTTCAGCGAGCTGCATCACATGTTTGTGGCTTATCTCTCTCAGACAATGTGGTTGAGATTGTTTTCCATTTGTTTGATGCAAATGAGGATGGAAATCTGAGTACGGAGGAGTTTGTTAGTGTGCTACAACATAGAGAAAGAGACATTGCTCAACCTGTGGAAACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAAATGTAAGGACACCTCTCCATCTTCTCGGTTGCTTTCCTGA
Predicted protein sequences of Glyma04g06880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06880.2 sequence type=predicted peptide gene model=Glyma04g06880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKPVDLMRAVVPVFPPSESKLVREGYLNGERSPGHLFCLPSEFFMLFDVDNDGLISFKEHIFFVTLLSIQESSFSAAFRMFDKDNDGEIDKEEFKKVMQSMRSHTRQGVQHRDGRRTGLRANASVENGGLMEYLFGKDGNGRLTHDKFVRFIRDLHDEIVRLEFAHYDYKSRKTIPAKDFAHSIVASADLSHLGRLLERVDELSNDPRFRDVRITFDEFKNFAELRKKLSPFSSGIFSFAEVQGLLTRDDFQRAASHVCGLSLSDNVVEIVFHLFDANEDGNLSTEEFVSVLQHRERDIAQPVETGIMGFLSCCWKCKDTSPSSRLLS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
