Glyma04g06820 - SoyBase

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Report for Sequence Feature Glyma04g06820

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5286197
stop:	5291900
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15170	AT	Annotation by Michelle Graham. TAIR10: tyrosyl-DNA phosphodiesterase-related \| chr5:4926300-4929307 REVERSE LENGTH=605	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
GO:0017005	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-tyrosyl-DNA phosphodiesterase activity	SoyBase	N/A	ISS
KOG2031	KOG	Tyrosyl-DNA phosphodiesterase	JGI		ISS
PTHR12415	Panther	TYROSYL-DNA PHOSPHODIESTERASE 1	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
PF06087	PFAM	Tyrosyl-DNA phosphodiesterase	JGI		ISS
UniRef100_B9RXR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosyl-DNA phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9RXR7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JUA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUA1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06820

Paralog	Evidence	Comments
Glyma06g06910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g064300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06820

Limit To All Plant Sequences

>Glyma04g06820.2   sequence type=transcript   gene model=Glyma04g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTAAAGGTAGTGTTGTTTTTACTAGTGTTCCACGGACTAAGCTAACAGGCTTTTGGGCTTTTTGAGAAATGTTTGTGAGTAGGCCCAGTTGTGATCTGGGTGTTGGAGTTTGAGACGCAGGAAGAAGGAAGCGTTTCAGGGTGATTGTGAGTGTGTTGGCAAGAAAGAAGTTTGATTCATCATTCATGTCTTTGTCTCCTCAGGTTGGATACTTGGTTCCACTAAATCGAAATTTTAAGGAAGAAGCTTCAGTTCCCAAGTTTGCTGTCTCAGATGGCATAAACGTTATTGGGCGTAACAACATTCCTGTCCCCGACAAGAGGCTTAGCCGCAAACACCTTACTTTAACTGCTTCTCCCAATGGCTCGGCTAGTTTGCTCGTCGAGGGGACGAACCCAATTGTTGTTAATTCTGGGAATAAGAGAAGGAAGCTGAATCCTAAAGAAGAAGCTACCATTTGCAATGGTGATATAATCGAGCTTATTCCCGGTCACCATCTTTTCAAATATCAGGTGTTGGGTGGTGATGGAAAATCTTCAACTTGTAGAAACAACGAAGCTCAATCATCATTCAAAAACAAAGCTTCAGGCAGGAGTTCCCAGGATAAGGTTGAAACAAGCAGCCAGAAACAAGGAAGGAATGCAGACGCACGGAAGTCGTCGGGTGAAGACAATAGTGTGGAGGCCATTCGTAATTTCCATGTCCCTAGTGACCAAATACCTTCCACTTTTCGACTTTTGCACGTGCAAGGGTTACCACCTTGGGCAAATACTTCTTGTGTTTCTATAGGTGATGTTATTCAGGGAGATATTAAAGTTGCTATTCTTTCAAACTACATGGTAGACATTGATTGGTTGGTTCCTGCATGTCCTGCACTTTCAAAAGTGCCCCATGTGCTAGTTATTCATGGAGAAAGTGATGGGAGGGTGGATTACATAAAGAGAAGCAAACCTGCAAACTGGATTCTGCACAAACCATCATTGCCAATTTCCTTTGGGACACATCATTCAAAGGCTATGATGCTTATATATCCTCAAGGAGTGAGAGTCATTGTGCATACAGCGAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCTGAGCAAGGGATCTGGATTTGAAAATGACCTGGTTGAATATCTCAGTGTGTTGAAGTGGCCAGAATTCTCAGTTAACCTTCCATTCCTTGGAAGCGTCAGTATATGTCCATCTTTCTTCAGGAAGTTTGATTATAGTGATGCAAGGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTTCTAGTTTGAAAAAGTGGGGACATATGAAGCTGCGATCTCTGCTCCAGGAGTGTACTTTTGATGAAGAGTTTAAGAAATCTCCACTTGTTTATCAGTTCTCTTCTCTTGGCTCTTTGGATGAAAAATGGATGACTGAGCTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGACAAAACACCCCTTGGTATGGGGGAGCCTCAAATCATATGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAGTTCCAAGTCCTCTGAAGAATGTGGAGAAAACATTTTTGAAGAAGTATTGGGCAAAATGGAAAGCAGACCATACTGGACGCTGCCGTGCTATGCCACATATAAAGACTTTTGCTCGTTACAAAAATCAGAGTCTTGCTTGGTTCTTGTTAACCTCGGCAAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCGTTCATATGAGGATAAATGCCCAGCCCGAGAATCTTCTGAGATGAAGAAAACAAAACTAGTAACCCTGACTGGGATTAAAAAGGAGAGTATGCATTCATCATCTGAAGTTATTATCCCTTTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCAAGATATCCCCTGGTCTTGGGACCGGCAATATAACAAGAAAGATGTCTATGGTCATGTTTGGCCACGGATGTGAGCATATCAAATGACATGATTGTTTCTGCAACCAAGTTTGCCTGTGCATGTATATATGTGTTTTACATGGGACAAAGGTGTCTTGTTTTCATTCCATACGTTTTGTCAGAAAAATCAGGCTTAACTTTTGTTTTGGAGTAAAATATACCAAAAGATTAAATGTTATTTCTTTTGATTCAAGAGGATTAAGTTTGTTTCAAATTATTTTTCATTCAAAGATATTGAAACCTACTTTGGTAGATTCAAAGCCTTGTTCCCTAATTTGTACTGCATGAAGCTTTCCGTTGTTCCTTTAATATCCTTTGTTATATAATATTATGTGC

Coding sequences of Glyma04g06820

Limit To All Plant Sequences

>Glyma04g06820.1   sequence type=CDS   gene model=Glyma04g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTGTCTCCTCAGGTTGGATACTTGGTTCCACTAAATCGAAATTTTAAGGAAGAAGCTTCAGTTCCCAAGTTTGCTGTCTCAGATGGCATAAACGTTATTGGGCGTAACAACATTCCTGTCCCCGACAAGAGGCTTAGCCGCAAACACCTTACTTTAACTGCTTCTCCCAATGGCTCGGCTAGTTTGCTCGTCGAGGGGACGAACCCAATTGTTGTTAATTCTGGGAATAAGAGAAGGAAGCTGAATCCTAAAGAAGAAGCTACCATTTGCAATGGTGATATAATCGAGCTTATTCCCGGTCACCATCTTTTCAAATATCAGGTGTTGGGTGGTGATGGAAAATCTTCAACTTGTAGAAACAACGAAGCTCAATCATCATTCAAAAACAAAGCTTCAGGCAGGAGTTCCCAGGATAAGGTTGAAACAAGCAGCCAGAAACAAGGAAGGAATGCAGACGCACGGAAGTCGTCGGGTGAAGACAATAGTGTGGAGGCCATTCGTAATTTCCATGTCCCTAGTGACCAAATACCTTCCACTTTTCGACTTTTGCACGTGCAAGGGTTACCACCTTGGGCAAATACTTCTTGTGTTTCTATAGGTGATGTTATTCAGGGAGATATTAAAGTTGCTATTCTTTCAAACTACATGGTAGACATTGATTGGTTGGTTCCTGCATGTCCTGCACTTTCAAAAGTGCCCCATGTGCTAGTTATTCATGGAGAAAGTGATGGGAGGGTGGATTACATAAAGAGAAGCAAACCTGCAAACTGGATTCTGCACAAACCATCATTGCCAATTTCCTTTGGGACACATCATTCAAAGGCTATGATGCTTATATATCCTCAAGGAGTGAGAGTCATTGTGCATACAGCGAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCTGAGCAAGGGATCTGGATTTGAAAATGACCTGGTTGAATATCTCAGTGTGTTGAAGTGGCCAGAATTCTCAGTTAACCTTCCATTCCTTGGAAGCGTCAGTATATGTCCATCTTTCTTCAGGAAGTTTGATTATAGTGATGCAAGGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTTCTAGTTTGAAAAAGTGGGGACATATGAAGCTGCGATCTCTGCTCCAGGAGTGTACTTTTGATGAAGAGTTTAAGAAATCTCCACTTGTTTATCAGTTCTCTTCTCTTGGCTCTTTGGATGAAAAATGGATGACTGAGCTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGACAAAACACCCCTTGGTATGGGGGAGCCTCAAATCATATGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAGTTCCAAGTCCTCTGAAGAATGTGGAGAAAACATTTTTGAAGAAGTATTGGGCAAAATGGAAAGCAGACCATACTGGACGCTGCCGTGCTATGCCACATATAAAGACTTTTGCTCGTTACAAAAATCAGAGTCTTGCTTGGTTCTTGTTAACCTCGGCAAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCGTTCATATGAGCTGGGAGTACTATTTTTACCATCATTATTCAAACGACACGAATCTGTATTTTCCTGTACCAGTAATGTTACAGTATCTGAGGATAAATGCCCAGCCCGAGAATCTTCTGAGATGAAGAAAACAAAACTAGTAACCCTGACTGGGATTAAAAAGGAGAGTATGCATTCATCATCTGAAGTTATTATCCCTTTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCAAGATATCCCCTGGTCTTGGGACCGGCAATATAACAAGAAAGATGTCTATGGTCATGTTTGGCCACGGATGTGA

>Glyma04g06820.2   sequence type=CDS   gene model=Glyma04g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTGTCTCCTCAGGTTGGATACTTGGTTCCACTAAATCGAAATTTTAAGGAAGAAGCTTCAGTTCCCAAGTTTGCTGTCTCAGATGGCATAAACGTTATTGGGCGTAACAACATTCCTGTCCCCGACAAGAGGCTTAGCCGCAAACACCTTACTTTAACTGCTTCTCCCAATGGCTCGGCTAGTTTGCTCGTCGAGGGGACGAACCCAATTGTTGTTAATTCTGGGAATAAGAGAAGGAAGCTGAATCCTAAAGAAGAAGCTACCATTTGCAATGGTGATATAATCGAGCTTATTCCCGGTCACCATCTTTTCAAATATCAGGTGTTGGGTGGTGATGGAAAATCTTCAACTTGTAGAAACAACGAAGCTCAATCATCATTCAAAAACAAAGCTTCAGGCAGGAGTTCCCAGGATAAGGTTGAAACAAGCAGCCAGAAACAAGGAAGGAATGCAGACGCACGGAAGTCGTCGGGTGAAGACAATAGTGTGGAGGCCATTCGTAATTTCCATGTCCCTAGTGACCAAATACCTTCCACTTTTCGACTTTTGCACGTGCAAGGGTTACCACCTTGGGCAAATACTTCTTGTGTTTCTATAGGTGATGTTATTCAGGGAGATATTAAAGTTGCTATTCTTTCAAACTACATGGTAGACATTGATTGGTTGGTTCCTGCATGTCCTGCACTTTCAAAAGTGCCCCATGTGCTAGTTATTCATGGAGAAAGTGATGGGAGGGTGGATTACATAAAGAGAAGCAAACCTGCAAACTGGATTCTGCACAAACCATCATTGCCAATTTCCTTTGGGACACATCATTCAAAGGCTATGATGCTTATATATCCTCAAGGAGTGAGAGTCATTGTGCATACAGCGAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCTGAGCAAGGGATCTGGATTTGAAAATGACCTGGTTGAATATCTCAGTGTGTTGAAGTGGCCAGAATTCTCAGTTAACCTTCCATTCCTTGGAAGCGTCAGTATATGTCCATCTTTCTTCAGGAAGTTTGATTATAGTGATGCAAGGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTTCTAGTTTGAAAAAGTGGGGACATATGAAGCTGCGATCTCTGCTCCAGGAGTGTACTTTTGATGAAGAGTTTAAGAAATCTCCACTTGTTTATCAGTTCTCTTCTCTTGGCTCTTTGGATGAAAAATGGATGACTGAGCTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGACAAAACACCCCTTGGTATGGGGGAGCCTCAAATCATATGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAGTTCCAAGTCCTCTGAAGAATGTGGAGAAAACATTTTTGAAGAAGTATTGGGCAAAATGGAAAGCAGACCATACTGGACGCTGCCGTGCTATGCCACATATAAAGACTTTTGCTCGTTACAAAAATCAGAGTCTTGCTTGGTTCTTGTTAACCTCGGCAAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCGTTCATATGAGGATAAATGCCCAGCCCGAGAATCTTCTGAGATGAAGAAAACAAAACTAGTAACCCTGACTGGGATTAAAAAGGAGAGTATGCATTCATCATCTGAAGTTATTATCCCTTTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCAAGATATCCCCTGGTCTTGGGACCGGCAATATAACAAGAAAGATGTCTATGGTCATGTTTGGCCACGGATGTGA

Predicted protein sequences of Glyma04g06820

Limit To All Plant Sequences

>Glyma04g06820.1   sequence type=predicted peptide   gene model=Glyma04g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSPQVGYLVPLNRNFKEEASVPKFAVSDGINVIGRNNIPVPDKRLSRKHLTLTASPNGSASLLVEGTNPIVVNSGNKRRKLNPKEEATICNGDIIELIPGHHLFKYQVLGGDGKSSTCRNNEAQSSFKNKASGRSSQDKVETSSQKQGRNADARKSSGEDNSVEAIRNFHVPSDQIPSTFRLLHVQGLPPWANTSCVSIGDVIQGDIKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGESDGRVDYIKRSKPANWILHKPSLPISFGTHHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNSLSKGSGFENDLVEYLSVLKWPEFSVNLPFLGSVSICPSFFRKFDYSDARVRLIASVPGYHSGSSLKKWGHMKLRSLLQECTFDEEFKKSPLVYQFSSLGSLDEKWMTELASSMSAGLSEDKTPLGMGEPQIIWPTVEDVRCSLEGYAAGNAVPSPLKNVEKTFLKKYWAKWKADHTGRCRAMPHIKTFARYKNQSLAWFLLTSANLSKAAWGALQKNNTQLMIRSYELGVLFLPSLFKRHESVFSCTSNVTVSEDKCPARESSEMKKTKLVTLTGIKKESMHSSSEVIIPLPLPYELPPLPYSSQDIPWSWDRQYNKKDVYGHVWPRM*

>Glyma04g06820.2   sequence type=predicted peptide   gene model=Glyma04g06820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSPQVGYLVPLNRNFKEEASVPKFAVSDGINVIGRNNIPVPDKRLSRKHLTLTASPNGSASLLVEGTNPIVVNSGNKRRKLNPKEEATICNGDIIELIPGHHLFKYQVLGGDGKSSTCRNNEAQSSFKNKASGRSSQDKVETSSQKQGRNADARKSSGEDNSVEAIRNFHVPSDQIPSTFRLLHVQGLPPWANTSCVSIGDVIQGDIKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGESDGRVDYIKRSKPANWILHKPSLPISFGTHHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNSLSKGSGFENDLVEYLSVLKWPEFSVNLPFLGSVSICPSFFRKFDYSDARVRLIASVPGYHSGSSLKKWGHMKLRSLLQECTFDEEFKKSPLVYQFSSLGSLDEKWMTELASSMSAGLSEDKTPLGMGEPQIIWPTVEDVRCSLEGYAAGNAVPSPLKNVEKTFLKKYWAKWKADHTGRCRAMPHIKTFARYKNQSLAWFLLTSANLSKAAWGALQKNNTQLMIRSYEDKCPARESSEMKKTKLVTLTGIKKESMHSSSEVIIPLPLPYELPPLPYSSQDIPWSWDRQYNKKDVYGHVWPRM*

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