Glyma04g06810 - SoyBase

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Report for Sequence Feature Glyma04g06810

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5272605
stop:	5276740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25220	AT	Annotation by Michelle Graham. TAIR10: KNOTTED1-like homeobox gene 3 \| chr5:8736208-8738087 FORWARD LENGTH=419	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009722	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of cytokinin stimulus	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0071345	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to cytokine stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF15	Panther	HOMEOBOX PROTEIN KNOTTED-1	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF03789	PFAM	ELK domain	JGI		ISS
PF03790	PFAM	KNOX1 domain	JGI		ISS
PF03791	PFAM	KNOX2 domain	JGI		ISS
UniRef100_A5Y4G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Class II KNOX homeobox transcription factor n=1 Tax=Medicago truncatula RepID=A5Y4G8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A065	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A065 related cluster n=1 Tax=unknown RepID=UPI000233A065	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06810

Paralog	Evidence	Comments
Glyma06g06886	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g064100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06810

Limit To All Plant Sequences

>Glyma04g06810.2   sequence type=transcript   gene model=Glyma04g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGATATTAACCTAATGTCTCATTCGAATATAAAGTGTTGAAATTCGTTTAACCAAGTCTAGACGGATGCGTGTATAAAAATGCAGGAAGGGCCACGCTGAAAATTAAAAAAAAAAAAAACAAGAAGAAGAAAAAAGCGGGGCTCACTGAAAAAGCAGTTTCCCGAATTAGTAAGTAATGACCGGAAAACCACTGTCAGGGATACTGAAAACCGCCTCATCTCTGAAATCTTGTTCGTAACCATTAATACAACGTTGGTAGTAACTCACAAAAGCCTCTGTTCCCTCCCTTTCCTTCACTTTACCATGTCCATGAACCAATAGTAGCTACCTTTCACGAACACAAACAAAGCCACTCTCTCGTTTTATATGGCGTACCACCATAACCCCCAAGAGCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAACCTCTCGTTGACAACTCCTTGCTCTCCGACCCTGCTTCCAAACCTGCCTCCGATCCTCATCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACTGACAACAACAACAACAACAACGTTAACGCTGCTAACAACAACACCAACAACGGCACCAACTTCCTCAATCTTCACACTTCCACTTCCGACTCCGGCCAATGGCTTGCTCGCCCGATCCTCAACCGCAACCACAGCGAGGTCATCGACGACGTGACCGGCGCCGGCGACTCCAACATGGCGGCCGCCGAATCCGGCGATTTGAAGGGTGATGCGGCGGCGGTGGAGGGAGGAAGCGACGGGCTTATGAACTGGCAGAATGCGAGGCTGAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCAAGGATCGACGCTCAGCTCACACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGTACAGCGATATTCTTTTTAGTGATTGTTACATCTCAACATAAAAATAAACCAATAAAGGTTGGTTACATGATAAAATGGAAATCAGTACCAGAAAATGATAAAATGGAAATAACTTGATTCAAGTTACCTCAATTATGTTCCTGCTATCAATGAACCAGCCTGTAATTTACTCTCCCAAACACAATATTTTAGTTATTTATGACCAATTTTTAGAAAACTGCAATCATTTATAAAAAAAGGCTCCTCTCTAAAAAATTTACTCACAATTTCAATGGGAAGAAATCTCAAATAATATTTTATAGGAAAATAGGCGTAACATGTGCTGCTGTATGTTTGTGATTAACTATTAACTAATAACTATACGGTCTCGGGTCGGGA

Coding sequences of Glyma04g06810

Limit To All Plant Sequences

>Glyma04g06810.1   sequence type=CDS   gene model=Glyma04g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACCACCATAACCCCCAAGAGCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAACCTCTCGTTGACAACTCCTTGCTCTCCGACCCTGCTTCCAAACCTGCCTCCGATCCTCATCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACTGACAACAACAACAACAACAACGTTAACGCTGCTAACAACAACACCAACAACGGCACCAACTTCCTCAATCTTCACACTTCCACTTCCGACTCCGGCCAATGGCTTGCTCGCCCGATCCTCAACCGCAACCACAGCGAGGTCATCGACGACGTGACCGGCGCCGGCGACTCCAACATGGCGGCCGCCGAATCCGGCGATTTGAAGGGTGATGCGGCGGCGGTGGAGGGAGGAAGCGACGGGCTTATGAACTGGCAGAATGCGAGGCTGAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCAAGGATCGACGCTCAGCTCACACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCGACAATGTCTGATGAGGAAGATGAACAAGTAGATAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCCACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGCTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAACCCCTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGGTCATAG

>Glyma04g06810.2   sequence type=CDS   gene model=Glyma04g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTACCACCATAACCCCCAAGAGCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCAACCTCTCGTTGACAACTCCTTGCTCTCCGACCCTGCTTCCAAACCTGCCTCCGATCCTCATCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCACGCACTACACTGACAACAACAACAACAACAACGTTAACGCTGCTAACAACAACACCAACAACGGCACCAACTTCCTCAATCTTCACACTTCCACTTCCGACTCCGGCCAATGGCTTGCTCGCCCGATCCTCAACCGCAACCACAGCGAGGTCATCGACGACGTGACCGGCGCCGGCGACTCCAACATGGCGGCCGCCGAATCCGGCGATTTGAAGGGTGATGCGGCGGCGGTGGAGGGAGGAAGCGACGGGCTTATGAACTGGCAGAATGCGAGGCTGAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCAAGGATCGACGCTCAGCTCACACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGTACAGCGATATTCTTTTTAGTGATTGTTACATCTCAACATAAAAATAAACCAATAAAGGTTGGTTACATGATAAAATGGAAATCAGTACCAGAAAATGATAAAATGGAAATAACTTGA

Predicted protein sequences of Glyma04g06810

Limit To All Plant Sequences

>Glyma04g06810.1   sequence type=predicted peptide   gene model=Glyma04g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYHHNPQELPLHHFTDQQQHHNQPLVDNSLLSDPASKPASDPHQPAPNWLNNALLRTHYTDNNNNNNVNAANNNTNNGTNFLNLHTSTSDSGQWLARPILNRNHSEVIDDVTGAGDSNMAAAESGDLKGDAAAVEGGSDGLMNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLTQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDEEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTALKSKRKRS*

>Glyma04g06810.2   sequence type=predicted peptide   gene model=Glyma04g06810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYHHNPQELPLHHFTDQQQHHNQPLVDNSLLSDPASKPASDPHQPAPNWLNNALLRTHYTDNNNNNNVNAANNNTNNGTNFLNLHTSTSDSGQWLARPILNRNHSEVIDDVTGAGDSNMAAAESGDLKGDAAAVEGGSDGLMNWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLTQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGTAIFFLVIVTSQHKNKPIKVGYMIKWKSVPENDKMEIT*

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