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Report for Sequence Feature Glyma04g06700

Feature Type:gene_model
Chromosome:Gm04
Start:5175655
stop:5176384
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31985AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51 SoyBaseE_val: 9.00E-28ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0002 KOG 60s ribosomal protein L39 JGI ISS
PTHR19970Panther RIBOSOMAL PROTEIN L39E JGI ISS
PF00832PFAM Ribosomal L39 protein JGI ISS
UniRef100_Q6KAJ8UniRef Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L39-1 n=10 Tax=Magnoliophyta RepID=RL391_ORYSJ SoyBaseE_val: 4.00E-28ISS
UniRef100_Q6KAJ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L39-1 n=10 Tax=Magnoliophyta RepID=RL391_ORYSJ SoyBaseE_val: 4.00E-28ISS

Expression Patterns of Glyma04g06700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06700
ParalogEvidenceComments
Glyma06g06791 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g063000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g06700
>Glyma04g06700.1   sequence type=CDS   gene model=Glyma04g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTCGCACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATTCCCTACTGGATCCGCATGAGGACCGATAACACCATCAGGTACAACGCGAAGCGCCGTCACTGGCGTCGCACCAAGCTTGGATTCTGA
Predicted protein sequences of Glyma04g06700
>Glyma04g06700.1   sequence type=predicted peptide   gene model=Glyma04g06700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*






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