Report for Sequence Feature Glyma04g06670
Feature Type: gene_model
Chromosome: Gm04
Start: 5130780
stop: 5133055
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06670
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G25170 AT
Annotation by Michelle Graham. TAIR10: PPPDE putative thiol peptidase family protein | chr5:8693257-8694438 FORWARD LENGTH=218
SoyBase E_val: 3.00E-95 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG0324
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12378 Panther
UNCHARACTERIZED
JGI ISS
PF05903 PFAM
PPPDE putative peptidase domain
JGI ISS
UniRef100_I1JU88 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU88_SOYBN
SoyBase E_val: 4.00E-160 ISS
UniRef100_O81728 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O81728_ARATH
SoyBase E_val: 3.00E-88 ISS
Expression Patterns of Glyma04g06670
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06670
Paralog Evidence Comments
Glyma06g06760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06670 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g062700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06670
Coding sequences of Glyma04g06670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06670.1 sequence type=CDS gene model=Glyma04g06670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTGCGCAAGAACAAGCTTGGCACCGTTCCCGTTCACCTCAACGTCTATGATCTCACCCCAATTAATGGCTACGCCTATTGGTTTGGCCTTGGACTCTACCATTCTGGGGTTCAAGTTCATGGGCTGGAATATGGATTTGGTGCGAACGAGCACGACACAACGGGGATTTTCCAAGTTCAACCGAAACACTGCCCTGGGTTCACCTTCAGAAAGTCAATTTTCATCGGAACAACAGATCTGGGTGCCAAGGATGTTCGAGCATTCATGGAGAAGCTAGCTCAAGATTATTCTGGCAATACCTACCATCTCATTTCCAAGAATTGCAACCATTTCTGTAACGATGTTTGTCTCAAATTGACCGGAAAGTCAATCCCTCGTTGGGTCAACCGGCTTGCTCGACTTGGTCTTCTGTGCAACTGTGTTCTCCCCCCTGGCCTAAATGACACAAAGGTTTCACAAGTTGCATCAGACAGGGTTCAAGAAGGTGAAAAGAGGAAAATTAGAAGCCATTCCTGTAGGTACGAAGGTTCCTCCAATCCTTCATCGTCTCGACGTTCAACAATTAAGAGTAGTAGTAGCCAAAGACATTGCCTTCCTCCATCTTCTTCTTTGATTAATGCTGCTTCAGCTTCAACCTTAACAGTGAAGTAA
Predicted protein sequences of Glyma04g06670
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06670.1 sequence type=predicted peptide gene model=Glyma04g06670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRKNKLGTVPVHLNVYDLTPINGYAYWFGLGLYHSGVQVHGLEYGFGANEHDTTGIFQVQPKHCPGFTFRKSIFIGTTDLGAKDVRAFMEKLAQDYSGNTYHLISKNCNHFCNDVCLKLTGKSIPRWVNRLARLGLLCNCVLPPGLNDTKVSQVASDRVQEGEKRKIRSHSCRYEGSSNPSSSRRSTIKSSSSQRHCLPPSSSLINAASASTLTVK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
