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Report for Sequence Feature Glyma04g06660

Feature Type:gene_model
Chromosome:Gm04
Start:5118855
stop:5120045
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10970AT Annotation by Michelle Graham. TAIR10: C2H2 and C2HC zinc fingers superfamily protein | chr5:3469268-3470086 FORWARD LENGTH=272 SoyBaseE_val: 4.00E-44ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10032Panther ZINC FINGER PROTEIN-RELATED JGI ISS
PTHR10032:SF119Panther ZFP1 (ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1), JGI ISS
UniRef100_G7J9W4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7J9W4_MEDTR SoyBaseE_val: 2.00E-67ISS
UniRef100_I1JU87UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU87_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g06660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06660
ParalogEvidenceComments
Glyma06g06750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g062600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g06660
>Glyma04g06660.1   sequence type=CDS   gene model=Glyma04g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACACTGAGCCACGAGCCTCTTCTCTATGATAACTCTGCTGGAGAGACTCCGCCAAGTCCAAGCACACCATTGCAGAATTCACGGGAGAAGAAACAACTATCTGTTAAGGAAGAAGAAGAGGAAGAAAAGGAGGCAAAAGCAGATACTTTATTGGATCTAAATGCCCCTGGTGGTGATTCTGCTATTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGTCAAGCACCACATCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTATTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAAAGGTCAATTGCAAAGAGAGGTCATCAAAGATCAGGATCACGTTTGATGGCCTCAGCTACAACAGCTTTGGGAATTCCCTTTCTCCATAATCACCTTCACCACCACTATGCCACTATGGCTTCTCTGCCTCTCCATGGTGCTTCTAGTAATAATAAACCACTTGGAATTCAGGCTCACTCCATTATTCACAAGCCTTCTTCTTCAAATTATTCTCATTTTTCATTCAATGGGTTTGGAACCACTTTTGGACATCGTGGTTGGTCTAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACGATGGAAAGTTTTCATAAAACATCAAGAGGCAATGTTGGGAAATTCGATGTGGTGAAAACGACCAGGCTTAATTCAGCGACCAATGAAGAAATCAGTGGATATATGGTTAGTGGTATTAGTCTTTTGAAGACTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA
Predicted protein sequences of Glyma04g06660
>Glyma04g06660.1   sequence type=predicted peptide   gene model=Glyma04g06660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLSHEPLLYDNSAGETPPSPSTPLQNSREKKQLSVKEEEEEEKEAKADTLLDLNAPGGDSAIGCSPVLNLITCLDTDLSSTTSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHQRSGSRLMASATTALGIPFLHNHLHHHYATMASLPLHGASSNNKPLGIQAHSIIHKPSSSNYSHFSFNGFGTTFGHRGWSRPLIDQQPGIGKLTMESFHKTSRGNVGKFDVVKTTRLNSATNEEISGYMVSGISLLKTNQEEMKHLDLSLKL*






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