Glyma04g06650 - SoyBase

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Report for Sequence Feature Glyma04g06650

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5101888
stop:	5106733
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25180	AT	Annotation by Michelle Graham. TAIR10: response regulator 12 \| chr2:10724490-10726961 REVERSE LENGTH=596	SoyBase	E_val: 6.00E-133	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0010380	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0031537	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0080022	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF38	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7J9W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR1 n=1 Tax=Medicago truncatula RepID=G7J9W3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339C2A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339C2A related cluster n=1 Tax=unknown RepID=UPI0002339C2A	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g06650

Locus	Gene Symbol	Protein Name
	RR26	Ubiquitous, Response Regiulator Type-B

Expression Patterns of Glyma04g06650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06650

Paralog	Evidence	Comments
Glyma06g06730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g062500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06650

Limit To All Plant Sequences

>Glyma04g06650.1   sequence type=CDS   gene model=Glyma04g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGTAGAGAAGAAAAGGAATGATTCCGGCGACGAGTTCCCCGTCGGAATGCGTGTTCTTGCCGTCGATGATGACCCCACTTGCCTCTTGGTTCTGAAAACTCTCCTCCAAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAAAGGCGTTGGCTCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTACACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGATGGTGATGAAGGGGATTTCTCATGGGGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCTACTTCTAATAGTGGAAATGGACTAGGGTCATCAGGAACAGGAAATTCTGATCAAAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGATGAAGATGAGGATCAGGAGAATGATCTTGACAATGAGGACCCATCAGCCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGACCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTTCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAACAAGCCAATATGGTGGCGGCCTTAGGGGTTGCAGATCCATCCTATTTGAGAATGAGTTCGGTGAGCGGGGTTGGACATGTACAAACATTAAGTGGTTCCGGACAGCTTCATAACAATAATTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAACAATGCCAATGATCATCATAAATTCCAGTCAGTCATTGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGACAGTGTCTGTAGGGCTTGATCAACTGCAAAACAATAAGGTTGTTATGTCTGTTCAGAACCTGACCACTGTTTTTGATGCCAAAACAACTTTTCCTATCCCAAATAAACTCCCAGATCCAAGACCAAAAATAACCAACTCTGTCTCTCATACTTCAGATGTGCATTTCTCAAACAATGCCTTGATGTTGGAACCACGCCCTCAAGGCTCACAAGGGAGTGTAAGAATTGGAACATTATCTTCTTCAGTAGCCTCTCAACATTCGGAATTTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTTTTTCCCTCCAAGTGAATGTTTTAGACAGACTAATATACCTCCTGCAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCTAAGTGGTCCATCCATCACTTCATTGTCCAGGCAATCCCATGATTCAATGACAGAAATGCACTCTGAAGGAATGACTTTTACTAACAGACCTGGGCATACAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTCACCATTCAAATATTATGTCAATAAACTCACTGACTCCAGTCAATGGGGCTGCTGTTCAAGCTGGCCATGCAGCAACGAACTCGGTCTTACACAGAAACTTGGATTTTAATTATTGTGATCCCTTACAAATGAAGCATGAAGGGTTTGTGGAGTTAACTGATGAGACCTTATTGAAACAACATCAGGGGAATACCATGGACCAGCAAAAATCTCAAGAAAATCATTTCTCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAATAG

Predicted protein sequences of Glyma04g06650

Limit To All Plant Sequences

>Glyma04g06650.1   sequence type=predicted peptide   gene model=Glyma04g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVEKKRNDSGDEFPVGMRVLAVDDDPTCLLVLKTLLQRCQYHVTTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKMVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEDQENDLDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGVADPSYLRMSSVSGVGHVQTLSGSGQLHNNNFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNANDHHKFQSVIVPVNQNGVQGMTVSVGLDQLQNNKVVMSVQNLTTVFDAKTTFPIPNKLPDPRPKITNSVSHTSDVHFSNNALMLEPRPQGSQGSVRIGTLSSSVASQHSEFSLSLLDQGRYSDNWTSAVQPSVIQTNFFPPSECFRQTNIPPADNMASVPLQGGNLSGPSITSLSRQSHDSMTEMHSEGMTFTNRPGHTSSNVPFQGWDDHNQDATHHSNIMSINSLTPVNGAAVQAGHAATNSVLHRNLDFNYCDPLQMKHEGFVELTDETLLKQHQGNTMDQQKSQENHFSNNLGSLEDLVSSMMK*

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