Glyma04g06620 - SoyBase

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Report for Sequence Feature Glyma04g06620

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5073791
stop:	5075620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32070	AT	Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr2:13640829-13641656 REVERSE LENGTH=275	SoyBase	E_val: 3.00E-156	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009451	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA modification	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004540	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonuclease activity	SoyBase	N/A	ISS
KOG0304	KOG	mRNA deadenylase subunit	JGI		ISS
PTHR10797	Panther	CCR4-ASSOCIATED FACTOR	JGI		ISS
PF04857	PFAM	CAF1 family ribonuclease	JGI		ISS
UniRef100_B9RNX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ccr4-associated factor, putative n=1 Tax=Ricinus communis RepID=B9RNX3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JU83	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU83_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06620

Paralog	Evidence	Comments
Glyma06g06700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g062300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06620

Limit To All Plant Sequences

>Glyma04g06620.3   sequence type=transcript   gene model=Glyma04g06620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATGTTAACGACTGATATCACATTGTCGCATCCCGAATTGCAAGAGCCCAGTTGTAAACGACACCTCCCGTGTAGTTGTTGCTGACCAAAACGACCCCACGCCCCATCCCCAGTACAAATCAGGTCTCAACCCCTCGCCCCCAACTTCCTGTCGCTTCCCCTTCTTCGCTCCCCCCCCGCTCGTTGACCTCCGATTCTCCCCTCATCGGAGCTCAAATCTCCGATCCCTCCCTTCATATCGCTTCACGGCAACCTTCTCTTCACCCATCGCAAGGTTAGATTCCTCACTCCTCTACTACTTCCAATTCTAGGGTTCCGGCTTCAACTCTAGTTCACTCCTAATTCCTCAGAACCACTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTGGACCTAATATGCTTGTGCTTGTTTCAGATCTAGTTGAATCTCGACCGGTTCGAAGCTCTACTCACTCAAATCCTCTTCAGATCTGGGGGGTTTGATTGCAATTCTCACTCTGCTGCTCGGATTTGTTCGTTTGAAATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTAATTGAAATTGAAAGAGAAAAAGAAAAAAGGAAAGAAGAATATAATTGGATGTAGAGTACGTTTTAAGTGTGAGTCTCTTTTTACTTCGTGTACACTTCTGCCAAAAAATGGTTGTTGTTTACTTGTAACATTTTCATCATCATCCTTGCTTGAACTGTAACTCAAACCCTAGCTGGTTTTGTTAGCTTGAGTTCTTTGTAAATCATCACTTCAGTTTAGTGTTTCAAATTTAAATAATAACTTATATGATGATTCCCTTAGTTTGCTTTGCTGCAGCTATTTGTTTCTTGTAATCTTTGCTCAACTTATAATCAATACCAACAACACTGTTCTCTGATTTCTGAAGATGTTTAGCCCAATTCTTAGT

Coding sequences of Glyma04g06620

Limit To All Plant Sequences

>Glyma04g06620.1   sequence type=CDS   gene model=Glyma04g06620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTAATTGA

>Glyma04g06620.3   sequence type=CDS   gene model=Glyma04g06620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTAATTGA

Predicted protein sequences of Glyma04g06620

Limit To All Plant Sequences

>Glyma04g06620.1   sequence type=predicted peptide   gene model=Glyma04g06620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNVSEDIFASDSIELLRQCGIDFKKNSENGIDVNRFGELLMSSGIVLNDSVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVESGQTN*

>Glyma04g06620.3   sequence type=predicted peptide   gene model=Glyma04g06620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNVSEDIFASDSIELLRQCGIDFKKNSENGIDVNRFGELLMSSGIVLNDSVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVESGQTN*

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