Report for Sequence Feature Glyma04g06610
Feature Type: gene_model
Chromosome: Gm04
Start: 5055846
stop: 5063384
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06610
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G25140 AT
Annotation by Michelle Graham. TAIR10: casein lytic proteinase B4 | chr2:10697877-10701998 REVERSE LENGTH=964
SoyBase E_val: 0 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009644 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to high light intensity
SoyBase N/A ISS
GO:0016485 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein processing
SoyBase N/A ISS
GO:0019538 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein metabolic process
SoyBase N/A ISS
GO:0042542 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG1051
KOG
Chaperone HSP104 and related ATP-dependent Clp proteases
JGI ISS
PTHR11638 Panther
ATP-DEPENDENT CLP PROTEASE
JGI ISS
PTHR11638:SF18 Panther
CLPC
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
PF02861 PFAM
Clp amino terminal domain
JGI ISS
PF07724 PFAM
AAA domain (Cdc48 subfamily)
JGI ISS
PF10431 PFAM
C-terminal, D2-small domain, of ClpB protein
JGI ISS
UniRef100_I1JU82 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU82_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LLI0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ClpB n=1 Tax=Phaseolus lunatus RepID=Q9LLI0_PHALU
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06610
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06610
Paralog Evidence Comments
Glyma06g06690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06610 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g062200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06610
Coding sequences of Glyma04g06610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06610.1 sequence type=CDS gene model=Glyma04g06610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACCAGAAGAACTCCGACGCTAACAAAATCCGTTTTCGCCGCCGTAACCGCTTCTAGGACCTCTCGCTCTCGCTCCCATTCCGCGCGACGACTCTTCCCCGCCATCCCTCGCGCTTCGGAGAATTCCCTTTCTCGGTCTCAGATTATCGACCCCACCAATGTCGCCTCCGCCAAGTTCCTCTCTCGCTCTTTCACTCGCACCTTCCACGCCACTAATCCCTCCCTCCGCTCCGCCGCAAGCTCTCAGGTGGCGCAGACGGACTTCACAGATATGGCATGGGAGGGGATTGTTGGTGCTGTTGATGCGGCGCGAGTTAGTAAACAACAAATTGTGGAGTCTGAGCACTTAATGAAAGCTCTTTTGGAGCAAAAGGATGGCTTGGCTAGAAGGATATTTACCAAGGCAGGATTGGACAACACGTCCGTTCTACAGGCTACTGAAGATTTTATAGCTAAGCAACCTAAGGTTACGGGTGACACTAGTGGTCCTGTAGTGGGCTCGCATTTTAGCTCCCTCTTGGACAATTCTCGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAACACCTTTTGCTAGCATTTCATTCTGATAAGAGATTTGGACAACAGTTGTTTAAGAATCTTCAGCTTAGTGAGAAAGCTTTGAAGGATGCTGTACAAGCTGTTCGGGGAAGTCAAAGAGTGACCGATCAAAATCCAGAGGGGAAATATGAAGCATTGGACAAGTATGGAAATGATCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCCGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCTGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGTGATGTTCCAGAGCCATTGATGAATCGAAAGTTGATCTCCCTTGATATGGGTTCATTGCTTGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACCGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATATATTGAAAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGCTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATTACAGAACGCTTCTTACCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAACTGAAGATGGAGATCACCTCTAAGCCTACGGAATTGGATGAGATAGACAGGGCTATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTTGAAAACGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGACAGAACAATGGGACAGCGAAAAAGTTTTTATGACTCGGATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAAGTGACTTCCGAAACTCTGGACAATCTTTACTCCGAGAAGAGGTCACTGACCTTGATATTACAGAGATTGTTAGCAAATGGACCGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTCTTGCTGGAACAGGTTCTTCACAAGAGGGTGGTTGGTCAGGATACTGCTGTAAAATCTGTCGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCGACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTCTAGTTGGAGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGCGGTCAGCTAACTGAAGTGGTCAGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATCTTGTTACAGTTGTTGGATGACGGAAGGATTACTGACTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGTTCTCATTACATACTTGACACTCTTCGTAGTACACAAGATGATAAAACTGCAGTCTATGATCAGATGAAAAGACAAGTTGTTGAGTTGGCTAGGCAAACTTTCCATCCAGAGTTCATGAATCGCATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCGAACAGATCAGCAAAATAGTGGAGCTCCAGATGGAGCGAGTGAAAAACAGGCTCAAGCAGAAGAAAATTGATCTTCATTACACAGAAAAAGCTGTTAAACTTCTTGGTGTACTGGGTTTTGATCCAAATTTTGGAGCTAGACCAGTTAAAAGAGTGATACAGCAATTGGTTGAAAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACTCAATCATTGTTGATGCTGATGTGACTCTATCAGGCAAAGAACGTTCTCCTCTAAATAAACTGCTTATTAAGAAGTTGGACAGCCCTGATGCGGATGCCATGGTCGTCAATGATTAA
Predicted protein sequences of Glyma04g06610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06610.1 sequence type=predicted peptide gene model=Glyma04g06610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATRRTPTLTKSVFAAVTASRTSRSRSHSARRLFPAIPRASENSLSRSQIIDPTNVASAKFLSRSFTRTFHATNPSLRSAASSQVAQTDFTDMAWEGIVGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATEDFIAKQPKVTGDTSGPVVGSHFSSLLDNSRKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKALKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELTEQWDSEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLSDFRNSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDTAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILDTLRSTQDDKTAVYDQMKRQVVELARQTFHPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHYTEKAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVTLSGKERSPLNKLLIKKLDSPDADAMVVND*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
