Glyma04g06600 - SoyBase

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Report for Sequence Feature Glyma04g06600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5049829
stop:	5055377
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39952	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:18527680-18530007 FORWARD LENGTH=775	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF139	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7K4B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K4B8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339988	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339988 related cluster n=1 Tax=unknown RepID=UPI0002339988	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g06600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g062100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06600

Limit To All Plant Sequences

>Glyma04g06600.1   sequence type=CDS   gene model=Glyma04g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATACGCATGTCGAAGGCTTACGATGCAGGTGAACTGATCTTGGTCTCGAAGCACATCAGAACCCTAGATTCCCTCCTCCGCTTCCACGCGCTGACGGTTACAAGCGGCCACTCCACGAACCTTTTCATGGCCTCAAAGCTGATATCTCTATACGATTCTCTGAACAACGATCCCAGTTCATGTTCCACACTCTTCCACTCTCTTCCCTCCAAAGACACATTCCTCTACAACTCCTTCCTCAAATCCCTCTTCTCCCGCTCCCTCTTCCCTCGCGTCCTCTCCCTCTTCTCCCACATGCGCGCCTCCAACCTCTCCCCCAACCACTTCACCCTACCCATCGTCGTCTCCGCCGCCGCGCACCTCACGCTCCTCCCCCACGGCGCATCACTCCACGCCCTCGCTTCCAAAACCGGCCTCTTCCATTCTTCCGCTTCCTTCGTTTCACTCTACTCGCGCTGTGGCCGAATGGAACTTGCACGCAAGGTGTTCGATGAAATTCCCAAAAGGGACGTGGTTGCTTGGACTGCACTCATCATCGGGCACGTGCACAACGGGGAGCCTGAGAAGGGTTTGAGGTGTCTCCGTCACGTGCATGGGGTTGTTGAAGATGATGAGAAGCCCAATGCTAAAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAACCTCGGTGCTGTGAGCGAAGGCTCGTGTTTGCATGGGGTGGTTGTCAAAAATGGGGTTGCTTCTTTTATACAGTCTTCGGTTTTGGATATGTATTCCAAATGCGGGGTTCCCCGAGAAGCGTATCGGTCCTTTTGTGAGGTGATTCACAAAGATCTTCTGTGCTGGACGTCCGTCATCGGGGTTTATGCGAGGATTGGGATGATGGGGGAGTGTCTGAGGTTGTTTAGGGAAATGCAGGAAAATGAAATACGCCCAGATGGGGTTGTTGTTGGTTGTGTGCTTTCGGGCTTTGGTAATTCCATGGATGTGTTTCAAGGGAAAGCGTTTCATGGAGTCATTATAAGGAGATATTATGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACTGCAAGTTTGGAATGTTAAGTTTGGCAGAGAGGATTTTTCCGTTGTGCCAAGGGAGTGGAGATGGCTGGAATTTTATGGTTTTTGGGTATGGTAAAGTAGGGGAGAATGTGAAATGTGTTGAGCTCTTCAGGGAGATGCAGTGGTTAGGTATTCATTCCGAAACAATTGGCATAGCTTCGGCAATTGCCTCATGTGCCCAGTTAGGAGCAGTTAATTTGGGTAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAAAAACATTTCAGTCACCAACTCACTCGTAGAGATGTATGGAAAATGTGGTAAGATGACCTTTGCTTGGAGGATATTTAATACATCGGAGACAGATGTTGTATCATGGAACACTTTGATTTCATCTCATGTTCACATCAAGCAGCATGAAGAGGCTGTAAATTTATTTAGTAAAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACACTTGTGGTAGTGCTTTCAGCTTGTTCTCACCTTGCATCTCTAGAGAAAGGAGAAAGGGTTCACTGCTACATAAATGAAAGTGGTTTTACACTCAATTTACCTCTCGGCACAGCATTGATTGATATGTATGCTAAGTGTGGGCAACTGCAAAAATCAAGAATGGTATTTGACTCTATGATGGAGAAGGATGTGATTTGCTGGAATGCGATGATTTCAGGCTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCAACATATGGAGGAATCAAATGTTATGCCCAATGGAATTACCTTCCTCTCTCTTCTCTCAGCATGTGCCCATGCAGGGCTTGTTGAAGAAGGCAAATACATGTTTGCCAGAATGAAGAGTTATTCTGTGAATCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTATGGTAATGTACAAGAAGCAGAAGCCATGGTCCTATCCATGCCCATTTCTCCGGATGGTGGTGTTTGGGGAGCTTTGTTAGGTCATTGTAAAACTCACAATCAAATTGAGATGGGAATAAGAATTGCGAAGTATGCTATTGACTTGGAACCAGAAAACGACGGCTACTATATAATCATGGCCAATATGTATAGCTTCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGACGATGAAAGAGAGGTGTTCAATGGGAAAGAAAGCTGGTTGGAGTCTGCTCTGA

Predicted protein sequences of Glyma04g06600

Limit To All Plant Sequences

>Glyma04g06600.1   sequence type=predicted peptide   gene model=Glyma04g06600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIRMSKAYDAGELILVSKHIRTLDSLLRFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFPLCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSETDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEAENVRRTMKERCSMGKKAGWSLL*

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