Glyma04g06590 - SoyBase

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Report for Sequence Feature Glyma04g06590

Feature Type:	gene_model
Chromosome:	Gm04
Start:	5043758
stop:	5045750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31890	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr4:15427290-15429049 REVERSE LENGTH=518	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
KOG4224	KOG	Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting	JGI		ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PTHR23315:SF38	Panther	ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	JGI		ISS
UniRef100_G7J9V6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J9V6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JU80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU80_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06590

Paralog	Evidence	Comments
Glyma06g06670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g062000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06590

Limit To All Plant Sequences

>Glyma04g06590.1   sequence type=CDS   gene model=Glyma04g06590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGTGTCATCAGAACAACGTCGGATCCATCGCTCTTGACCACCGCCACTCCGCCAAAAATGCCACCGCCGCCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCTCGCTACCGGTATCGCCAGCGCGGTGGCGATGTCAGCGACGGCGGTGACTTCAGCTCAGCGGCGTGCCACACAGAGAAGGAGGAGAGGTCGGAGAAGCTATCGGATCTTCTGAACGCCGCGGAGAATAAAATGGCGGCGGCGGAGGAGGAGAAGAAGAAGGAAGAGGCACTGGCGGAACTGAAGCAAGTGGTGAAGGAGCTGCGCGAAGAAGACTTTAGGAAGCAGCGAATCGCCGCTGCGAGAGTGAGGTCACTAGCGAAGGAAGATTCGGAAGCGAGAGTGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGGATGCTCGATTCAGAAGACGCTCATTCTCAAATCGCATCGCTCTACGCATTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGTGCGGTGCACAAGATGCTGAAGCTAATCGAATCGAGCGGTTTAGATTCGTCGGTGTCTGAAGCGATTGTTGCAAATTTCCTCGGATTAAGCGCTTTGGATTCGAACAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAACGAATTTAAACGATAGTAAAAGCACGTCTCAATCCCAATCGCAAGTGAAGCAAGATGCTATGCGAGCTTTGTACAATCTCTCGATCTGTCAGAGCAACGTTTCAGTAGTTTTGGAAACAGATTTGGTTTGGTTTCTAGTGTCCACAATAGGAGACATGGAAGTGAGCGAGAGAAGTCTCGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTTCGCGACGCGATTCCGATTCTTGTGGACGCGTTGAGTTGGACGGACTCGCCGGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGATAATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATAGTGTCGTCGCTGCTTGAGTTAACGCTGGTGGGAACCACGCTGGCTCAAAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGAAGTTACGGTGGAAACTTTAACTTGGGTGTCTCTGCTCCTATTTGTGGATCTTCTTCTTCTTCGTCGAAAGGGTGCTTGGTGGAGGAAGATGGGATCATGAGTGAGGAAAAGAAAGCGGTGAAGCAGTTAGTGCAGCAGAGTTTGCAGAGCAATATGATCAAGATTGTCAAGAGGGCTAACTTGCGTCACGATTTTGTTACATCTACCCATTTTGCTTCACTCACTTCCAAGAGTCTCCCATTTTGA

Predicted protein sequences of Glyma04g06590

Limit To All Plant Sequences

>Glyma04g06590.1   sequence type=predicted peptide   gene model=Glyma04g06590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKCHQNNVGSIALDHRHSAKNATAAGHFRVLRRLIFDAVSCGGTSRYRYRQRGGDVSDGGDFSSAACHTEKEERSEKLSDLLNAAENKMAAAEEEKKKEEALAELKQVVKELREEDFRKQRIAAARVRSLAKEDSEARVNLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGLDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLTNLNDSKSTSQSQSQVKQDAMRALYNLSICQSNVSVVLETDLVWFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVRDAIPILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRIDKGKQVSGSYGGNFNLGVSAPICGSSSSSSKGCLVEEDGIMSEEKKAVKQLVQQSLQSNMIKIVKRANLRHDFVTSTHFASLTSKSLPF*

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