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Report for Sequence Feature Glyma04g06581

Feature Type:gene_model
Chromosome:Gm04
Start:5034934
stop:5038694
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06581
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25110AT Annotation by Michelle Graham. TAIR10: stromal cell-derived factor 2-like protein precursor | chr2:10684428-10685838 FORWARD LENGTH=218 SoyBaseE_val: 8.00E-132ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0052033GO-bp Annotation by Michelle Graham. GO Biological Process: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3358 KOG Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains JGI ISS
PTHR10050Panther MANNOSYLTRANSFERASE JGI ISS
PTHR10050:SF6Panther STROMAL CELL-DERIVED FACTOR 2-RELATED JGI ISS
PF02815PFAM MIR domain JGI ISS
UniRef100_G7J9V5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Stromal cell-derived factor 2-like protein n=1 Tax=Medicago truncatula RepID=G7J9V5_MEDTR SoyBaseE_val: 3.00E-142ISS
UniRef100_I1JU78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1JU78_SOYBN SoyBaseE_val: 8.00E-163ISS

Expression Patterns of Glyma04g06581
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g06581 not represented in the dataset
Glyma04g06581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06581
ParalogEvidenceComments
Glyma06g06660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06581 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g061900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06581
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g06581
>Glyma04g06581.2   sequence type=transcript   gene model=Glyma04g06581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTCCATTGCATTGCAGTGTAAGTATTTACAAAGCAAAGCGAAGCAAGCATTCACTGAATGCGCTCTATCTCTCTCTTTCGATCTGGGTACTAACCCTAACCCGCTTCGAACCGTGGCTTCCTCAGGCTCGCAGAACCTCTCTCGAAGAAAACCTTCTTCTTCTTCGTCTTCGTCTTCTCAACAAACACCCGGGTCGACCCGGATCGTTTACCGAGAATCTCGGATCCCATCGGAATCCGATTTCCCGATCTGGCAGCAGAACTGGTTCATCGCATTGCTCTTCGTCATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGAGTTACTTAGTATCGATACTTATTCTAAACGGGTAAACCATGGATAGTGGGAGTGGGTGGCTGGCACCGGTTCTGATAACAAATGCAGGTTTTTCTATTGAAGGATAAATATACAGGAGCATTTAGGATTAGATAACGGTAGTAATATTTTGTCATAGGTACACTTTGTTATGTAGTAAGTGCATGCCCCATTTTCATTTTCCCCGCTGAAAATACTTGGTGTCTGTTGTTTTGTGAACGCCATATACCATTCCTCTAATAGGACTACGAAACGCAATGAGTCTATTTTTCAATTGAATTATTATACGGATAAAAATGAACCTTTATGGATGTGTTTCTCTTTTTGATTTTGATAATGCAAAAGGATGGGAAATCCTTTCTGGTCCTTTACGTTCATTTGCAAGCGAGGAAAATTCTTTTCAGGTG
Coding sequences of Glyma04g06581
>Glyma04g06581.1   sequence type=CDS   gene model=Glyma04g06581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTGCAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA

>Glyma04g06581.2   sequence type=CDS   gene model=Glyma04g06581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA
Predicted protein sequences of Glyma04g06581
>Glyma04g06581.1   sequence type=predicted peptide   gene model=Glyma04g06581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGFFALAIFLFLTLDSDIAPSSTASASASAASSEGVEVQVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQRIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*

>Glyma04g06581.2   sequence type=predicted peptide   gene model=Glyma04g06581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGFFALAIFLFLTLDSDIAPSSTASASASAASSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQRIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*






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