Glyma04g06450 - SoyBase

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Report for Sequence Feature Glyma04g06450

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4925680
stop:	4928196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10870	AT	Annotation by Michelle Graham. TAIR10: chorismate mutase 2 \| chr5:3430691-3432272 REVERSE LENGTH=265	SoyBase	E_val: 4.00E-98	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0046417	GO-bp	Annotation by Michelle Graham. GO Biological Process: chorismate metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004106	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chorismate mutase activity	SoyBase	N/A	ISS
KOG0795	KOG	Chorismate mutase	JGI		ISS
PTHR21145	Panther	CHORISMATE MUTASE	JGI		ISS
UniRef100_G7I7N3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chorismate mutase n=3 Tax=Medicago truncatula RepID=G7I7N3_MEDTR	SoyBase	E_val: 8.00E-126	ISS
UniRef100_I1JU65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06450

Paralog	Evidence	Comments
Glyma06g06491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g061100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06450

Limit To All Plant Sequences

>Glyma04g06450.2   sequence type=transcript   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCCAAACTAATAAAGACATAATGTTATTACTTGCAGTTGCAGAACAAATAGTGTCAAACATTTGGGTAGCGTTGACCGATGAATTGACCTTTGCGGTTTCATGCATATAATAAGAAGACATTGTTTTCTTTGGTCTTAATTTTCTATCAATCGTTACTGTATTGTCCTGTTAACTGTGGTGTTGAGTAGTCCTGAAACAATAACATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGAAGCCATTTCAATGCAATCAATCTTAAGAAATGAATATGGTGTCATTGTTTAATTTAAAAGATCAGTTTCTTATGTGGTTGTTTATTGCTGGTTTCTTATGGATGTGAGTTCAGATAATAATATTATATAACTTTTTAGAAAGCTTTACATATGGTTGGATAAAACGGTTCCCATAATATTATGCAAAAAAGTATTGAGA

>Glyma04g06450.3   sequence type=transcript   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCCAAACTAATAAAGACATAATGTTATTACTTGCAGTTGCAGAACAAATAGTGTCAAACATTTGGGTAGCGTTGACCGATGAATTGACCTTTGCGGTTTCATGCATATAATAAGAAGACATTGTTTTCTTTGGTCTTAATTTTCTATCAATCGTTACTGTATTGTCCTGTTAACTGTGGTGTTGAGTAGTCCTGAAACAATAACATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGATCCATCCCAATTTTTTATATAGCAGAAAATTGTGCACAAACGTGGCTCATGCAACCGTAATTGAGGTATCAGAAACCTCTAAAAACTTTAATGTTGTCGTAATTGCATGCAGACCTTTTCAAAAAAAAAAAAAAACCTTGGTCATTACATTATTTCTACGCTATGATCATTTTCAACTTTCAAGCACTATAACTTTTGTTGGTTTTTGACTTTATGCTGTTGTACATGTAAAAGTTGAAACGGTAAATTAATGTTTGGTTTTTGCAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGAAGCCATTTCAATGCAATCAATCTTAAGAAATGAATATGGTGTCATTGTTTAATTTAAAAGATCAGTTTCTTATGTGGTTGTTTATTGCTGGTTTCTTATGGATGTGAGTTCAGATAATAATATTATATAACTTTTTAGAAAGCTTTACATATGGTTGGATAAAACGGTTCCCATAATATTATGCAAAAAAGTATTGAGA

Coding sequences of Glyma04g06450

Limit To All Plant Sequences

>Glyma04g06450.1   sequence type=CDS   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGATCCATCCCAATTTTTTATATAGCAGAAAATTGTGCACAAACGTGGCTCATGCAACCGTAATTGAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGA

>Glyma04g06450.2   sequence type=CDS   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGA

>Glyma04g06450.3   sequence type=CDS   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGATCCATCCCAATTTTTTATATAGCAGAAAATTGTGCACAAACGTGGCTCATGCAACCGTAATTGAGGTATCAGAAACCTCTAAAAACTTTAATGTTGTCGTAATTGCATGCAGACCTTTTCAAAAAAAAAAAAAAACCTTGGTCATTACATTATTTCTACGCTATGATCATTTTCAACTTTCAAGCACTATAACTTTTGTTGGTTTTTGA

Predicted protein sequences of Glyma04g06450

Limit To All Plant Sequences

>Glyma04g06450.1   sequence type=predicted peptide   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLRFLVLFLTLASCRESYKMAKAEYNYTVDSARASLVRQEDTIIFGLIERARFPLNSPTYNQSYTSIPQFRGTLLDFLVRHTEAIQAKAGRYINPEENPFFPENLPPSVVPRYPFSQFLHPAAAMININNAIWKLYFDELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVGEAKFRESPQGYEPLIRAKIHPNFLYSRKLCTNVAHATVIEDKGALMKLLTYESVEEMVVKRVKKKAMVFGQEVSLDRDVKGITYKVDPSVVSLLYQKWLIPLTKNVEVEYLLNRLD*

>Glyma04g06450.2   sequence type=predicted peptide   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLRFLVLFLTLASCRESYKMAKAEYNYTVDSARASLVRQEDTIIFGLIERARFPLNSPTYNQSYTSIPQFRGTLLDFLVRHTEAIQAKAGRYINPEENPFFPENLPPSVVPRYPFSQFLHPAAAMININNAIWKLYFDELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVGEAKFRESPQGYEPLIRAKDKGALMKLLTYESVEEMVVKRVKKKAMVFGQEVSLDRDVKGITYKVDPSVVSLLYQKWLIPLTKNVEVEYLLNRLD*

>Glyma04g06450.3   sequence type=predicted peptide   gene model=Glyma04g06450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLRFLVLFLTLASCRESYKMAKAEYNYTVDSARASLVRQEDTIIFGLIERARFPLNSPTYNQSYTSIPQFRGTLLDFLVRHTEAIQAKAGRYINPEENPFFPENLPPSVVPRYPFSQFLHPAAAMININNAIWKLYFDELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVGEAKFRESPQGYEPLIRAKIHPNFLYSRKLCTNVAHATVIEVSETSKNFNVVVIACRPFQKKKKTLVITLFLRYDHFQLSSTITFVGF*

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