Glyma04g06435 - SoyBase

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Report for Sequence Feature Glyma04g06435

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4910917
stop:	4914991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06435

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG3603	KOG	Predicted phospholipase D	JGI		ISS
PTHR10185	Panther	PHOSPHOLIPASE D - RELATED	JGI		ISS
PTHR10185:SF6	Panther	MAJOR ENVELOPE PROTEIN - RELATED	JGI		ISS
PF08371	PFAM	Phospholipase D/viral envelope	JGI		ISS
UniRef100_G7J9U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D4 n=1 Tax=Medicago truncatula RepID=G7J9U5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339814	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339814 related cluster n=1 Tax=unknown RepID=UPI0002339814	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06435

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g06435 not represented in the dataset	Glyma04g06435 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06435

Paralog	Evidence	Comments
Glyma06g06475	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06435 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g060900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06435

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06435

Limit To All Plant Sequences

>Glyma04g06435.2   sequence type=transcript   gene model=Glyma04g06435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTATTTTGATCTCAATTAATCTCCATATGACGACACTTACTCGAGTTCTATTAAATCTGTCAAGTAGAAATTGGTGGGGACTATGAATACATGGTGATCTGGGACTGTCTAATAATTTGATATGGACATGCTATTATTACCACTTTGTGACTCATAACTGGGTTGTAGGGGATGTGCTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTTCACATTATTGCTCAGTACTGGCAGCTGCTACCTTCTCCTGATGATCCTCGCTCAGGGGACTATGGTTATACTCAGCATCAGATGCATGAATTTGGTGCCGATCAAGGTGTTGCCCTTTATGAAGCATTGGATGCTGCTGCTGACCGTAATGTTAGCATCAGGTTATTGTCCCACTCTGGAGTGTATCCAACTTTTGCCTCAGAACCATCCAAACTTGCTTTTGGAAGGCCTAATGTTGAGAATGTGAGATTGTTACTTGAGAATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGAATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAACTGGGAATTTATTTTGCTGATTGTCATGAAATAGCTAAAAAGGTTGAGGTTTACTTTGACAATTTATGGACACTAGCATCGCTTAATTCTTCAGCTTACACAAAAACAGTGTTTGATCAAGACTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCATTAATCATGGAGAGAGGTGCATGTCACCTCTCCCTCAATATCTGGAGACTCCTCATATTGCAGGATATCCTATTCTGTCTGAACCTTATATGTTTAAGCTTCCATTTCAAACGCCTGGGAGTAACTATTTAACAAAGCACCTCCAAGGCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCAAGCATGGATTGATACAATTAAGTCTGTTGGAAAGAAGGAAACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCATCCCTATCCTCTGCAATATCACAGGTGGTGTTTTCCAAGAATGTAACAGTGCAGATATTGGTGGCATATTGGGCACACTCTATCAACAACACAGATGAGTACCTGAAGTCTCTCCTCTACACCAACAATCTCTGCTCTTCCTCAAAATACAACACATGCTCTGGGAAAGTTGAGATAAAATATTATGTGGTTCCAGGTTTCAACATGACAGGGCCTGCCATCAAGGGTGGAGCTAGAACAGGAAACATATACCCTGATTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAATCTTGTATGGGACTACTTCTTCACAACAGCAGGTGTCAGCTTTGGGACATACAACACTGCCATCATCTCTCAACTCAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGTTTGAGAAAGGTCATACAAGAAGTTCAATCTAATTATTGTTTTATTTTATGATATAAAAAAGATGAATAAAGCCAATGTGTTATGTGTTGTTGCAATGAAAAGGAAAATTTTATGTTATTTTGCAAAATTGCCGTATAGTTGTTTTGAGTTAAAAAAAAAGTAATGTGCGGTTGAATCACCAGCAAGGTTTTATTTTATCTACCATGCAACATGTAATAGCAGCAAAAGTGAATTGGAAGTAGACAAAGGAAGCCATGGGAAAGATAGGTTCTTCTGTTGAGGTTTCCACAGTGTCATTGTCATACAATCATAATGTTG

Coding sequences of Glyma04g06435

Limit To All Plant Sequences

>Glyma04g06435.1   sequence type=CDS   gene model=Glyma04g06435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACACACTACGAGGATTGGTATCCACTGTGTCTATGTGTGTTTTAATATATTGGTGTTGTTGTGCAGAGTGTGTGCATCAACATCATCCTCTTCCCACTGTAAAGCATGGTTAGTGCAATCCATTCCCACCAATATGCCCCACTTATCCCATGTTCCCGGCACCCTCTCTACTGGGGATGTGCTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTTCACATTATTGCTCAGTACTGGCAGCTGCTACCTTCTCCTGATGATCCTCGCTCAGGGGACTATGGTTATACTCAGCATCAGATGCATGAATTTGGTGCCGATCAAGGTGTTGCCCTTTATGAAGCATTGGATGCTGCTGCTGACCGTAATGTTAGCATCAGGTTATTGTCCCACTCTGGAGTGTATCCAACTTTTGCCTCAGAACCATCCAAACTTGCTTTTGGAAGGCCTAATGTTGAGAATGTGAGATTGTTACTTGAGAATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGAATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAACTGGGAATTTATTTTGCTGATTGTCATGAAATAGCTAAAAAGGTTGAGGTTTACTTTGACAATTTATGGACACTAGCATCGCTTAATTCTTCAGCTTACACAAAAACAGTGTTTGATCAAGACTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCATTAATCATGGAGAGAGGTGCATGTCACCTCTCCCTCAATATCTGGAGACTCCTCATATTGCAGGATATCCTATTCTGTCTGAACCTTATATGTTTAAGCTTCCATTTCAAACGCCTGGGAGTAACTATTTAACAAAGCACCTCCAAGGCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCAAGCATGGATTGATACAATTAAGTCTGTTGGAAAGAAGGAAACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCATCCCTATCCTCTGCAATATCACAGGTGGTGTTTTCCAAGAATGTAACAGTGCAGATATTGGTGGCATATTGGGCACACTCTATCAACAACACAGATGAGTACCTGAAGTCTCTCCTCTACACCAACAATCTCTGCTCTTCCTCAAAATACAACACATGCTCTGGGAAAGTTGAGATAAAATATTATGTGGTTCCAGGTTTCAACATGACAGGGCCTGCCATCAAGGGTGGAGCTAGAACAGGAAACATATACCCTGATTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAATCTTGTATGGGACTACTTCTTCACAACAGCAGGTGTCAGCTTTGGGACATACAACACTGCCATCATCTCTCAACTCAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGTTTGAGAAAGGTCATACAAGAAGTTCAATCTAA

>Glyma04g06435.2   sequence type=CDS   gene model=Glyma04g06435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGAATTTGGTGCCGATCAAGGTGTTGCCCTTTATGAAGCATTGGATGCTGCTGCTGACCGTAATGTTAGCATCAGGTTATTGTCCCACTCTGGAGTGTATCCAACTTTTGCCTCAGAACCATCCAAACTTGCTTTTGGAAGGCCTAATGTTGAGAATGTGAGATTGTTACTTGAGAATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGAATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAACTGGGAATTTATTTTGCTGATTGTCATGAAATAGCTAAAAAGGTTGAGGTTTACTTTGACAATTTATGGACACTAGCATCGCTTAATTCTTCAGCTTACACAAAAACAGTGTTTGATCAAGACTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCATTAATCATGGAGAGAGGTGCATGTCACCTCTCCCTCAATATCTGGAGACTCCTCATATTGCAGGATATCCTATTCTGTCTGAACCTTATATGTTTAAGCTTCCATTTCAAACGCCTGGGAGTAACTATTTAACAAAGCACCTCCAAGGCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCAAGCATGGATTGATACAATTAAGTCTGTTGGAAAGAAGGAAACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCATCCCTATCCTCTGCAATATCACAGGTGGTGTTTTCCAAGAATGTAACAGTGCAGATATTGGTGGCATATTGGGCACACTCTATCAACAACACAGATGAGTACCTGAAGTCTCTCCTCTACACCAACAATCTCTGCTCTTCCTCAAAATACAACACATGCTCTGGGAAAGTTGAGATAAAATATTATGTGGTTCCAGGTTTCAACATGACAGGGCCTGCCATCAAGGGTGGAGCTAGAACAGGAAACATATACCCTGATTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAATCTTGTATGGGACTACTTCTTCACAACAGCAGGTGTCAGCTTTGGGACATACAACACTGCCATCATCTCTCAACTCAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGTTTGAGAAAGGTCATACAAGAAGTTCAATCTAA

Predicted protein sequences of Glyma04g06435

Limit To All Plant Sequences

>Glyma04g06435.1   sequence type=predicted peptide   gene model=Glyma04g06435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHTTRIGIHCVYVCFNILVLLCRVCASTSSSSHCKAWLVQSIPTNMPHLSHVPGTLSTGDVLRWLAANSTTRLHIIAQYWQLLPSPDDPRSGDYGYTQHQMHEFGADQGVALYEALDAAADRNVSIRLLSHSGVYPTFASEPSKLAFGRPNVENVRLLLENWWGSGIVHAKVWISDSRNVYIGSANNDWKSLTQVKELGIYFADCHEIAKKVEVYFDNLWTLASLNSSAYTKTVFDQDWQVERKVPCWSHFINHGERCMSPLPQYLETPHIAGYPILSEPYMFKLPFQTPGSNYLTKHLQGSYLSFAPPELLFGKYQADEQAWIDTIKSVGKKETVRISTMDWLGQSQFMDQTIYWSSLSSAISQVVFSKNVTVQILVAYWAHSINNTDEYLKSLLYTNNLCSSSKYNTCSGKVEIKYYVVPGFNMTGPAIKGGARTGNIYPDFTRVNHGKYAVSDVRAHIGTSNLVWDYFFTTAGVSFGTYNTAIISQLREIFNADWNSPYAVPFEEFEKGHTRSSI*

>Glyma04g06435.2   sequence type=predicted peptide   gene model=Glyma04g06435   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHEFGADQGVALYEALDAAADRNVSIRLLSHSGVYPTFASEPSKLAFGRPNVENVRLLLENWWGSGIVHAKVWISDSRNVYIGSANNDWKSLTQVKELGIYFADCHEIAKKVEVYFDNLWTLASLNSSAYTKTVFDQDWQVERKVPCWSHFINHGERCMSPLPQYLETPHIAGYPILSEPYMFKLPFQTPGSNYLTKHLQGSYLSFAPPELLFGKYQADEQAWIDTIKSVGKKETVRISTMDWLGQSQFMDQTIYWSSLSSAISQVVFSKNVTVQILVAYWAHSINNTDEYLKSLLYTNNLCSSSKYNTCSGKVEIKYYVVPGFNMTGPAIKGGARTGNIYPDFTRVNHGKYAVSDVRAHIGTSNLVWDYFFTTAGVSFGTYNTAIISQLREIFNADWNSPYAVPFEEFEKGHTRSSI*

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