Report for Sequence Feature Glyma04g06420
Feature Type: gene_model
Chromosome: Gm04
Start: 4894084
stop: 4898417
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G10840 AT
Annotation by Michelle Graham. TAIR10: Endomembrane protein 70 protein family | chr5:3424910-3427797 REVERSE LENGTH=648
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
KOG1278
KOG
Endosomal membrane proteins, EMP70
JGI ISS
PTHR10766 Panther
TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER
JGI ISS
PF02990 PFAM
Endomembrane protein 70
JGI ISS
UniRef100_G7I879 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane 9 superfamily protein member n=1 Tax=Medicago truncatula RepID=G7I879_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JU62 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU62_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06420
Paralog Evidence Comments
Glyma06g06460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g060700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06420
Coding sequences of Glyma04g06420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06420.1 sequence type=CDS gene model=Glyma04g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGTTTTGGAGATCTCTCGTAGCGTTCTCTGCGGTTCTTCTGCTTCTCATCCATGGCTCTCACTGCTTCTACCTCCCCGGCGTCGCTCCACAGGATTTCCAGAAGGGAGATTCATTGCAAGTGAAAGTAAATAAATTAACATCAACGAAGACCCAGCTTCCTTATTCATATTATTCACTTCCCTATTGTGCCCCATCAAAAATACAGGATAGTGCAGAAAATCTTGGGGAAGTACTTCGTGGTGACCGTATTGAAAATTCTCTCTATGTGTTTAAAATGCGTGAGCCACAAATGTGCAATATTCTGTGTAATCTTAAACTTGATGCTAAAACTGCTAAGGAGTTCAAAGAGAAGATCAGTGATGAGTATCGGGTGAACATGATCCTAGATAACCTTCCTCTAGTTTTTCCCTTGAAACGGACTGATCAGGATTCAACTGCCTATCAGCTTGGTTTTCTTGTTGGACTCAAAGGGCAGTATAGTGGGAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTACACCATTCAGTGTTAAACATGAATATGAAGGTAAATTTGATGTAAAAACGACTCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAACTCCAACAGTCCCCAAGAGGTTGAAGAGGGCAAGGAAATTATCTTCACATATGATGTTGAATTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCCTATTTGCTAATGAATGATGATCAAATCCACTGGTTCTCAATTGTTAACTCATTAATGATTGTTCTCTTCCTTTCTGGCATGGTGGCAATGATTATGCTGAGGACACTGTACCGTGACATTGCAAAGTACAATGAGCTTGAGACCCAAGAAGAAGCCCAAGAGGAGACTGGTTGGAAGCTTGTCCATGGTGATGTATTTAGGCCCCCCAACAACTCAGATTTGCTGTGTGTTTATGTTGGAACCGGTGTTCAGTTTTTCGGCATGATACTAGTAACCATGATATTTGCTGTCCTTGGGTTCCTTTCTCCTTCAAACCGAGGTGGGCTGATGACAGCCATGCTCTTGCTTTGGGTTTTCATGGGAATATTTGCTGGGTACTCGTCAACTCGCTTGTACAAAATGTTCAAAGGGTCGGAGTGGAAAAAAGTTGCCCTCAGGACTGCAACCATGTTCCCTGCAGTTGTCTCTACCATTTTCTTTGTTTTAAATGCTCTCATATGGGGCCAAAAATCATCAGGAGCTGTGCCATTTGGCACAATGTTTGCTCTGATCTTTTTATGGTTTGGGATCTCAGTTCCACTTGTTTTTGTGGGTAGCTATGTCGGATTCAAGAAGCCTGCGATTGAGAATCCTGTGAAAACGAACAAGATCCCAAGGCAGATTCCTGAGCAGGCGTGGTACATGAACCCAGTTTTCTCTGTCCTGATTGGTGGAATACTCCCATTTGGAGCTGTTTTCATTGAGCTTTTCTTCATTCTCACCTCAATCTGGTTGAATCAGTTTTACTACATCTTCGGATTCCTCTTTTTGGTCTTCATCATTCTCATTGTCACTTGTGCTGAAATAACCATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAGGATTATTTGTGGTGGTGGCGGTCATACCTTACCTCTGGTTCCTCCGCACTTTACCTCTTTCTTTATGCAACTTTCTACTTCTTCACCAAGCTTGAAATCACAAAGTTGGTATCTGCAATATTCTACTTTGGGTACATGCTTATAGCGTCTTACGCATTTTTTGTGGTAACCGGCACCATCGGATTTTATGCATGCTTTTGGTTCACTAGGCTCATCTACTCCTCAGTCAAAATTGATTAG
Predicted protein sequences of Glyma04g06420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06420.1 sequence type=predicted peptide gene model=Glyma04g06420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFWRSLVAFSAVLLLLIHGSHCFYLPGVAPQDFQKGDSLQVKVNKLTSTKTQLPYSYYSLPYCAPSKIQDSAENLGEVLRGDRIENSLYVFKMREPQMCNILCNLKLDAKTAKEFKEKISDEYRVNMILDNLPLVFPLKRTDQDSTAYQLGFLVGLKGQYSGSKEEKYFIHNHLAFTVKYHKDMLTESARIVGFEVTPFSVKHEYEGKFDVKTTRLTTCDPHAKHTVVNSNSPQEVEEGKEIIFTYDVEFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPNNSDLLCVYVGTGVQFFGMILVTMIFAVLGFLSPSNRGGLMTAMLLLWVFMGIFAGYSSTRLYKMFKGSEWKKVALRTATMFPAVVSTIFFVLNALIWGQKSSGAVPFGTMFALIFLWFGISVPLVFVGSYVGFKKPAIENPVKTNKIPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFIILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACFWFTRLIYSSVKID*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
