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Report for Sequence Feature Glyma04g06395

Feature Type:gene_model
Chromosome:Gm04
Start:4885100
stop:4890504
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06395
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31850AT Annotation by Michelle Graham. TAIR10: proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF61Panther PGR3 (PROTON GRADIENT REGULATION 3) JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7J9T7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J9T7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JU60UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JU60_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g06395
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g06395 not represented in the dataset
Glyma04g06395 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06395
ParalogEvidenceComments
Glyma06g06430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06395 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g060500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06395
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g06395
>Glyma04g06395.2   sequence type=transcript   gene model=Glyma04g06395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATAATTGATACTATAAAGTTTCACTAATAATTCTATCCTCACCTTTCACCTAACAACCACAAGGGTAAACCTTACCCGGAACATGCTGATTTTGGTGGCAAAAATATCCAAACCGAAATTTGATGGAACACTTACGAACAGCAAAGCTAATCATGCGCTTTGGCTTTTTCTCTGTCACTGATTAACGATTACTATCTGCTCTGCTCACTTTGTATACCCAGTTCCGGTGACAGGTTCATACAGTTTTGATTTGCTATTATCTAATCTTCAGTGTGCTTGTTCTGAATTTCAGTCTCTCCTTTCGTTGATTATTATTGGACTTTTGCGTTTCTATGGCTGTCTTAGTGCTCTGTTCTTCAACCATGTGTAGTAGCAATTTGTCCTCTTGTGCTTCTAGTGACACCAATGTTTATGTTATGAGCAATAATGGGTTCTTTGGAGGGATCCCATTAGTCAAAATGAAATCTTTTCCAAATGGGTCTTTGGTAAATTGGAAGAAACATGGAAAGAGACAATTGGGTCTTCGTGTGTTTGAGACAAGATGTGCCCATGAGGTAGTTGTGGTGAATGGTAAGAGCAAAAGTAGTGTGTCTTCTGAAGAAGTTATTGGCGTTCTGAAGTGAGATGGAGGCTGATTGTTTGATCAGGCAAGTCTCTGGGCTTTATGCAAGTCTGGAAAAGTTGATCAGGCATTTGATATGTTAGATGTGATGAGAGTGAAAGGAATTTTTCCAAATCTTCATACTTACAACACGCTGATCTCTGGGCTTTTGAACCTGAGAAGATTAGATGAGGAATTAGAGCTTTTCAACAATATGGAATCTTTGGGTGTTGAACCTACTGCTTATTCATACGTTCTTTTCATTGACTATTATGCAAAGTTGGGGGATCCTGAAAAAGCTCTTGACACCTTTGAAAAAATCAAAAAGAGAGGCATTATGCCTAGTATAGCAGCATGTAATGCATCTTTATATAGTCTTGCTGAAATGGGTAGGATCAGAGAAGCAAAAGATATATTCAATGTTCTTCACAATTGTGGGCTTTCACCGGACTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGACAAATAGACATAGACACAAAACTTTTGACTGAGATGTTAAGCAAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGGCCGAGTTGATGAAGCATGGCAAATGTTTGCAAGACTGAAGGACTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAGGGAAAACTCTTAAAGGCCCTTGATTTGTTTTGGAGTATGAAAGAGTCTGGATGCCCTCCAAACACGGTGACTTTTAACGTACTCCTCGATTGTCTTTGCAAGAACGATGCAGTTGATTTGGCCTTGAAAATGTTCTGTAGAATGACAATTATGAACTGTAATCCTGATGTTCTGACGTATAACACTATCATCTATGGCTTGCTCAAAGAAGGTAGAGCTGGTTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCCCCTGATCATGTAACTTTGTTCACCCTCCTTCCTGGTGTTGTAAAGGATGGAAAGGTTGAGGATGCGATCAAGATTGTCATGGAATTTGTACATCAGTCAGGTTTACAGACAGGTAATCAAGTCTGGGGAGAATTAATGAAATGTATTTTGATTGAAGCTGAAATAGAAGAGGCCATTTCATTTGCCGAAGGATTGGTATGCAATTCTATTTGCCAGGATGATAATTTGATATTACCTCTTGTTAGAGTCCTGTATAAGCAAAAGAAGGCTCTAGATGCTAAACAATTGTTTGATAAATTCACCAAAACTTTGGGAATTCACCCAACCCCAGAATCATATAACTGCTTGATGGATGGGTTTCTTGGATGTAATATCACTGAAGCAGCTTTGAAACTTTTTGTTGAGATGAAGAATGCAGGTTGTTGTCCAAATAATTTCACCTACAACTTGCAGCTTGATGCTCATGGCAAATCTAAGAGGATTGATGAACTTTTTGAACTGTACAATGAGATGCTTTGTAGGGGATGCAGGCCCAATATTATAACCCATAATATTATCATCTCTGCCCTTGTGAAATCTAATAGCATAAACAAGGCATTAGATTTATATTATGAAATCGTAAGTGTTGATTTCTTTCCCACTCCTTGGTCATACGGCCCTCTTATAGGTGGCCTTTTAAAGGCTGGAAGATCGGAGGAAGCAATGAACATTTTTGAGGAGATGCCAGACTATCAATCATCAATGCAAGCCCAATTGTGCTATTTATAATATTTTTATCAATGGATTTGGGAAAGCAGGCAACGTTGATATTGCTTGTGATTTGTTCAAAAGGATGGTTAAGGAAGGGATAAGGCCTGACTTGAAGTCTTATACCATTCTTGTAGAATGTCTGTTCATGACTGGTAGAGTTGATGATGCTGTGCACTACTTTGAGGAGCTAAAGTTAACTGGCCTTGATCCCGATACTGTTTCTTACAATCTTATGATCAATGGCCTTGGAAAATCATGTAGGTTGGAGGTAGCTCTTTCTCTTTTAAGTGAAATGAAGAATAGGGGAATTTCTCCTGATCTCTATACTTACAATGCATTGATTATCCATTTTGGAAATGCTGGAATGGTGGACCAAGCAGGAAAGATGTTTGAGGAACTGCAACTTATGGGTCTTGAACCAAATGTCTTCACTTATAATGCTCTCATTCGTGGGCATAGTAAGTCAGGAAACAAAGATCGAGCCTTTTCTGTCTTCAAGAAGATGATGGTTGTGGGGTGTAGCCCCAATGCAGGAACATTTGCCCAATTGCCTAATAAATGCTGATTTTACTGAGATATCTCATGGGGACCTTTTCTTATGTGCCTGATCTCAAAAGGGAGGCATGAAGGTTCACTTTGTCTTGGAAATGGTCTTGGAGATTGGAATTGCATACCAATCTTTCAATTAATGATTGGTATGCAAATTATTTGTATGATTCTGGAAATTCCTGCTGATTAATGCTGACAATTACTTGTGTAAAAAAAAGTATCCTGGTTCTTGCAATAACTTTTGAGGACCCATTCTGTACATTAGACTGCATACACAGTTGAGGCTTTCGAGGCTGATGATAGAGAGGTGGGAATGGAGAAAGGGTGGAAGTGTATGTTGCTGGGAAAAGGGGGAAATAAGGGAATTGACAACAAAAATGTAAGGGCTTCTATTTTTATAAAAATCAAATATTGAATAAAACTGACAACAAAATGTAAGGGCTTCTAGAGCCCGTTGGTGCCAAATCAAATCCTGAATAAACTGACAACAAAAAAGTTGTCCTTTTATTCAATTTCGATTGATTTTTGGATCTTATGTTCAAAATTGAATTGAATCAAACGGAATTGCAAGCATATTAAATTTATATTAATTTTGGTATTTTTTTAAAAAATAAACTTGAGATTATGTTGAGCAAGTAATTACAATTTAGACTAAAT
Coding sequences of Glyma04g06395
>Glyma04g06395.1   sequence type=CDS   gene model=Glyma04g06395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGATGTGATGAGAGTGAAAGGAATTTTTCCAAATCTTCATACTTACAACACGCTGATCTCTGGGCTTTTGAACCTGAGAAGATTAGATGAGGAATTAGAGCTTTTCAACAATATGGAATCTTTGGGTGTTGAACCTACTGCTTATTCATACGTTCTTTTCATTGACTATTATGCAAAGTTGGGGGATCCTGAAAAAGCTCTTGACACCTTTGAAAAAATCAAAAAGAGAGGCATTATGCCTAGTATAGCAGCATGTAATGCATCTTTATATAGTCTTGCTGAAATGGGTAGGATCAGAGAAGCAAAAGATATATTCAATGTTCTTCACAATTGTGGGCTTTCACCGGACTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGACAAATAGACATAGACACAAAACTTTTGACTGAGATGTTAAGCAAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGGCCGAGTTGATGAAGCATGGCAAATGTTTGCAAGACTGAAGGACTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAGGGAAAACTCTTAAAGGCCCTTGATTTGTTTTGGAGTATGAAAGAGTCTGGATGCCCTCCAAACACGGTGACTTTTAACGTACTCCTCGATTGTCTTTGCAAGAACGATGCAGTTGATTTGGCCTTGAAAATGTTCTGTAGAATGACAATTATGAACTGTAATCCTGATGTTCTGACGTATAACACTATCATCTATGGCTTGCTCAAAGAAGGTAGAGCTGGTTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCCCCTGATCATGTAACTTTGTTCACCCTCCTTCCTGGTGTTGTAAAGGATGGAAAGGTTGAGGATGCGATCAAGATTGTCATGGAATTTGTACATCAGTCAGGTTTACAGACAGGTAATCAAGTCTGGGGAGAATTAATGAAATGTATTTTGATTGAAGCTGAAATAGAAGAGGCCATTTCATTTGCCGAAGGATTGGTATGCAATTCTATTTGCCAGGATGATAATTTGATATTACCTCTTGTTAGAGTCCTGTATAAGCAAAAGAAGGCTCTAGATGCTAAACAATTGTTTGATAAATTCACCAAAACTTTGGGAATTCACCCAACCCCAGAATCATATAACTGCTTGATGGATGGGTTTCTTGGATGTAATATCACTGAAGCAGCTTTGAAACTTTTTGTTGAGATGAAGAATGCAGGTTGTTGTCCAAATAATTTCACCTACAACTTGCAGCTTGATGCTCATGGCAAATCTAAGAGGATTGATGAACTTTTTGAACTGTACAATGAGATGCTTTGTAGGGGATGCAGGCCCAATATTATAACCCATAATATTATCATCTCTGCCCTTGTGAAATCTAATAGCATAAACAAGGCATTAGATTTATATTATGAAATCGTAAGTGTTGATTTCTTTCCCACTCCTTGGTCATACGGCCCTCTTATAGGTGGCCTTTTAAAGGCTGGAAGATCGGAGGAAGCAATGAACATTTTTGAGGAGATGCCAGACTATCAATCATCAATGCAAGCCCAATTGTGCTATTTATAA

>Glyma04g06395.2   sequence type=CDS   gene model=Glyma04g06395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGATGTGATGAGAGTGAAAGGAATTTTTCCAAATCTTCATACTTACAACACGCTGATCTCTGGGCTTTTGAACCTGAGAAGATTAGATGAGGAATTAGAGCTTTTCAACAATATGGAATCTTTGGGTGTTGAACCTACTGCTTATTCATACGTTCTTTTCATTGACTATTATGCAAAGTTGGGGGATCCTGAAAAAGCTCTTGACACCTTTGAAAAAATCAAAAAGAGAGGCATTATGCCTAGTATAGCAGCATGTAATGCATCTTTATATAGTCTTGCTGAAATGGGTAGGATCAGAGAAGCAAAAGATATATTCAATGTTCTTCACAATTGTGGGCTTTCACCGGACTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGACAAATAGACATAGACACAAAACTTTTGACTGAGATGTTAAGCAAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTGGCCGAGTTGATGAAGCATGGCAAATGTTTGCAAGACTGAAGGACTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAAAGAGGGAAAACTCTTAAAGGCCCTTGATTTGTTTTGGAGTATGAAAGAGTCTGGATGCCCTCCAAACACGGTGACTTTTAACGTACTCCTCGATTGTCTTTGCAAGAACGATGCAGTTGATTTGGCCTTGAAAATGTTCTGTAGAATGACAATTATGAACTGTAATCCTGATGTTCTGACGTATAACACTATCATCTATGGCTTGCTCAAAGAAGGTAGAGCTGGTTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCCCCTGATCATGTAACTTTGTTCACCCTCCTTCCTGGTGTTGTAAAGGATGGAAAGGTTGAGGATGCGATCAAGATTGTCATGGAATTTGTACATCAGTCAGGTTTACAGACAGGTAATCAAGTCTGGGGAGAATTAATGAAATGTATTTTGATTGAAGCTGAAATAGAAGAGGCCATTTCATTTGCCGAAGGATTGGTATGCAATTCTATTTGCCAGGATGATAATTTGATATTACCTCTTGTTAGAGTCCTGTATAAGCAAAAGAAGGCTCTAGATGCTAAACAATTGTTTGATAAATTCACCAAAACTTTGGGAATTCACCCAACCCCAGAATCATATAACTGCTTGATGGATGGGTTTCTTGGATGTAATATCACTGAAGCAGCTTTGAAACTTTTTGTTGAGATGAAGAATGCAGGTTGTTGTCCAAATAATTTCACCTACAACTTGCAGCTTGATGCTCATGGCAAATCTAAGAGGATTGATGAACTTTTTGAACTGTACAATGAGATGCTTTGTAGGGGATGCAGGCCCAATATTATAACCCATAATATTATCATCTCTGCCCTTGTGAAATCTAATAGCATAAACAAGGCATTAGATTTATATTATGAAATCGTAAGTGTTGATTTCTTTCCCACTCCTTGGTCATACGGCCCTCTTATAGGTGGCCTTTTAAAGGCTGGAAGATCGGAGGAAGCAATGAACATTTTTGAGGAGATGCCAGACTATCAATCATCAATGCAAGCCCAATTGTGCTATTTATAA
Predicted protein sequences of Glyma04g06395
>Glyma04g06395.1   sequence type=predicted peptide   gene model=Glyma04g06395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDVMRVKGIFPNLHTYNTLISGLLNLRRLDEELELFNNMESLGVEPTAYSYVLFIDYYAKLGDPEKALDTFEKIKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNVLHNCGLSPDSVTYNMMMKCYSKAGQIDIDTKLLTEMLSKGCEPDIIVVNSLIDTLYKAGRVDEAWQMFARLKDLKLAPTVVTYNILLTGLGKEGKLLKALDLFWSMKESGCPPNTVTFNVLLDCLCKNDAVDLALKMFCRMTIMNCNPDVLTYNTIIYGLLKEGRAGYAFWFYHQMKKFLSPDHVTLFTLLPGVVKDGKVEDAIKIVMEFVHQSGLQTGNQVWGELMKCILIEAEIEEAISFAEGLVCNSICQDDNLILPLVRVLYKQKKALDAKQLFDKFTKTLGIHPTPESYNCLMDGFLGCNITEAALKLFVEMKNAGCCPNNFTYNLQLDAHGKSKRIDELFELYNEMLCRGCRPNIITHNIIISALVKSNSINKALDLYYEIVSVDFFPTPWSYGPLIGGLLKAGRSEEAMNIFEEMPDYQSSMQAQLCYL*

>Glyma04g06395.2   sequence type=predicted peptide   gene model=Glyma04g06395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDVMRVKGIFPNLHTYNTLISGLLNLRRLDEELELFNNMESLGVEPTAYSYVLFIDYYAKLGDPEKALDTFEKIKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNVLHNCGLSPDSVTYNMMMKCYSKAGQIDIDTKLLTEMLSKGCEPDIIVVNSLIDTLYKAGRVDEAWQMFARLKDLKLAPTVVTYNILLTGLGKEGKLLKALDLFWSMKESGCPPNTVTFNVLLDCLCKNDAVDLALKMFCRMTIMNCNPDVLTYNTIIYGLLKEGRAGYAFWFYHQMKKFLSPDHVTLFTLLPGVVKDGKVEDAIKIVMEFVHQSGLQTGNQVWGELMKCILIEAEIEEAISFAEGLVCNSICQDDNLILPLVRVLYKQKKALDAKQLFDKFTKTLGIHPTPESYNCLMDGFLGCNITEAALKLFVEMKNAGCCPNNFTYNLQLDAHGKSKRIDELFELYNEMLCRGCRPNIITHNIIISALVKSNSINKALDLYYEIVSVDFFPTPWSYGPLIGGLLKAGRSEEAMNIFEEMPDYQSSMQAQLCYL*






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