Glyma04g06320 - SoyBase

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Report for Sequence Feature Glyma04g06320

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4843120
stop:	4845962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24820	AT	Annotation by Michelle Graham. TAIR10: translocon at the inner envelope membrane of chloroplasts 55-II \| chr2:10575038-10576829 FORWARD LENGTH=539	SoyBase	E_val: 0	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyllide a oxygenase [overall] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0051537	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding	SoyBase	N/A	ISS
PTHR21266	Panther	IRON-SULFUR DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR21266:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00355	PFAM	Rieske [2Fe-2S] domain	JGI		ISS
PF08417	PFAM	Pheophorbide a oxygenase	JGI		ISS
UniRef100_I1JU51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU51_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O49931	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TIC 55, chloroplastic n=1 Tax=Pisum sativum RepID=TIC55_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06320

Paralog	Evidence	Comments
Glyma06g06370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g059800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06320

Limit To All Plant Sequences

>Glyma04g06320.1   sequence type=CDS   gene model=Glyma04g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTGTTATTATTATGTGGCCAGGAACGACACACGAAACGTGCATTTGTCTCTTTTCCTGTGTTTCTTCCTCGTTTGAGTTTGTGTTTGTGCTATCTTCTTCGCTCTTCACTTTTGTTGTCTAACATGGCTTTGGTGAATCCGTTTCTGTGTACCACTCGAACGTCCCTCCCTCTGCGAGTTTCAGGTCCACCAAACCAAGTCCTACCACGTTGGACTCTCTGCTCCCAATATTCATTCAAAACATCATCACTAAGATCGAAGCAACTCAGGTGTGGCGCCACTGCAGACATCAAAGCAGATCACGCGGTTCTTGTGGGCCCCACCAGCGAGGAGGAGAGAAAAGGGGACTATGACTGGACACAGGAATGGTACCCTTTGTATCTCACTCAGAATGTGCCCGAAGATGCACCTTTGGGTCTCAGAGTGTTTGATAAACAGCTCGTGTTGTTCAAGGATGGCAATGGCCAGTTTCGCTGTTACGAAGATCGCTGCCCCCACAGGTTAGCGAAACTATCTGAGGGACAGTTGATTGATGGAAGGCTCGAGTGTCTATACCATGGATGGCAATTTGAAGGGGAGGGAAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCCAAAATCCCAAGGGCTGCTTGTGTTAAAACATATGAAGTGAGGGACTCTCAAGGTGTTATTTGGGTATGGATGTCCCTCAAGACACCTCCAAATGTCAGTAAATTACCTTGGTTTGAGAACTTCGCAAGGCCGGGGTTTCAAGATGTTTCGACAATTCACGAACTCCCTTATGATCACTCTATTCTTCTGGAGAACCTGATGGATCCTGCTCATATCCCAATCTCCCATGACAGAACAGATTGGACTGCGAAAAGGGAGGATGCTCAGCCGCTGTGTTTTGAGGTGACCGAACGAACAGATAGAGGGTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGATCCATGCCTAACTTCTTGCGGTTTGAGGCTCCTTGTGTTCTACAAAACAACAGGGAAATTGTTGATAAGAATGGTGAAATAAACTACTTCAGTGGCCTGTTCCTTTGTAGACCAACCGGGCAAGGGAAATCCATGCTGATAGTTAGGTTTGGAGGAACAAAAAGATCTCCACTAGCAAAAGTGTTTCCTAAGTGGTACTTCCATCAGAATGCAAGCAAGGTGTTTGAGCAAGACATGGGATTCTTGTCATCACAAAATGAAATTCTTCTGAGAGAAAAGGTTCCAACAAAGGAACTATACCTGAATCTGAAATCATCAGACACATGGGTTGCTGAATACAGGAAGTGGATGGACAAAGCGGGGCATGGAATGCCATATCATTTTGGTCACAGCACTATCTCTTTGCCTAAAGAGCCTGCTGTGGTTGAACACGCACCTGCTGGACTAGTCGCAGGACAATCAGCTTCCTCACCAACCAAGGGGGGCATTGGAACAATGCATGCCCCTAATTTTGCCAACAGATATTTTAGGCATGTGATTCATTGCAAAGGATGTAGAACCGTCGTCAAAGCTTTCGAAGCTTGGAAAAATGCTCTTTCAGCTGTGGCAATTGCATTAACTGCGTTGGCAATTCTGCTTTCTGGGAGACAATGGAAGGTCCTTCTCTTGGCATCTGCAGCTCTCTGCTCTGTTGGAGTCTATGCTTGCTCAACCGCCATTGCAATGAATACAACAAATTTTATTAGGACACATAGGAGATTGTGA

Predicted protein sequences of Glyma04g06320

Limit To All Plant Sequences

>Glyma04g06320.1   sequence type=predicted peptide   gene model=Glyma04g06320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVLLLCGQERHTKRAFVSFPVFLPRLSLCLCYLLRSSLLLSNMALVNPFLCTTRTSLPLRVSGPPNQVLPRWTLCSQYSFKTSSLRSKQLRCGATADIKADHAVLVGPTSEEERKGDYDWTQEWYPLYLTQNVPEDAPLGLRVFDKQLVLFKDGNGQFRCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRAACVKTYEVRDSQGVIWVWMSLKTPPNVSKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDWTAKREDAQPLCFEVTERTDRGFAGWWGREKDGSMPNFLRFEAPCVLQNNREIVDKNGEINYFSGLFLCRPTGQGKSMLIVRFGGTKRSPLAKVFPKWYFHQNASKVFEQDMGFLSSQNEILLREKVPTKELYLNLKSSDTWVAEYRKWMDKAGHGMPYHFGHSTISLPKEPAVVEHAPAGLVAGQSASSPTKGGIGTMHAPNFANRYFRHVIHCKGCRTVVKAFEAWKNALSAVAIALTALAILLSGRQWKVLLLASAALCSVGVYACSTAIAMNTTNFIRTHRRL*

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