Glyma04g06310 - SoyBase

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Report for Sequence Feature Glyma04g06310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4836326
stop:	4840539
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31770	AT	Annotation by Michelle Graham. TAIR10: debranching enzyme 1 \| chr4:15370296-15372422 REVERSE LENGTH=418	SoyBase	E_val: 0	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0008419	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA lariat debranching enzyme activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG2863	KOG	RNA lariat debranching enzyme	JGI		ISS
PTHR12849	Panther	RNA LARIAT DEBRANCHING ENZYME	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
PF05011	PFAM	Lariat debranching enzyme, C-terminal domain	JGI		ISS
UniRef100_G7J9S6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lariat debranching enzyme n=1 Tax=Medicago truncatula RepID=G7J9S6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JU50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06310

Paralog	Evidence	Comments
Glyma06g06360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g059700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06310

Limit To All Plant Sequences

>Glyma04g06310.1   sequence type=CDS   gene model=Glyma04g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATAGCGGTGGAAGGGTGCATGCACGGGGACCTGGACAATGTCTACAGAACCCTTCAACAGTTGGAGAAATCTGAAAACACGAAAATCGACCTTCTCCTCTGCTGCGGCGATTTCCAAGCCGTGAGGAACGAGCATGACTTGAAGAGCCTGAACGTCCCTCTCAAATACCGCTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCCTACCCCACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGGGGTGGTGAGGTTTGGGAATGTTCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCATGTTCGTGAATATGATGTTCGCAAATTGATGCAAGTCAAGGAGCCAATTGATGTTTTTCTTTCGCATGATTGGCCAGTGAGAATCACTGATTATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAGATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCCTATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGAGGCATAAATCTTGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAAGCTACAAGAGAGGGGGTGCAAACCTTTTGAATTTGTTAGAACAGCTCCTTGTTATGACCCTTCACGATCCAATTTTGATGGTGCTTTTGCTGTGAATCCCCGAAATCCTCAGACAGAATCTTTTGTGCGGCTTCTGGAACTTCCATATCTTTTTGATAGGAATCCTGAAGCAAAGGATTTGTCACCTTATCCTTCTCCTTCAATTCAGAGAGGCACGGCTTATGATAGCGAGGACATTCCCATTGATGATGTGGCTGATGATGATGATGATGATGAAGAGCTCCCAAAAGTTGATAACGTTGAAACTGAGACTTCCAATTTGTGA

Predicted protein sequences of Glyma04g06310

Limit To All Plant Sequences

>Glyma04g06310.1   sequence type=predicted peptide   gene model=Glyma04g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIAVEGCMHGDLDNVYRTLQQLEKSENTKIDLLLCCGDFQAVRNEHDLKSLNVPLKYRSMNSFWKYYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGAAGVVRFGNVRIGGLSGIYKSFDYKLGHFERPPYDHNTIKSVYHVREYDVRKLMQVKEPIDVFLSHDWPVRITDYGDWRELVRRKHYFKQEIEEKRLGSKPAAELLEKLKPHYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCIPGRDFLQIVEIESDAGPYEIQYDEEWLAITRKFNPIFPLTYKGADFRGINLEMEDCLEWVRSKLQERGCKPFEFVRTAPCYDPSRSNFDGAFAVNPRNPQTESFVRLLELPYLFDRNPEAKDLSPYPSPSIQRGTAYDSEDIPIDDVADDDDDDEELPKVDNVETETSNL*

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