Report for Sequence Feature Glyma04g06260
Feature Type: gene_model
Chromosome: Gm04
Start: 4793164
stop: 4801713
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24970 AT
Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:8604358-8608656 REVERSE LENGTH=761
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1235
KOG
Predicted unusual protein kinase
JGI ISS
PTHR10566 Panther
CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED
JGI ISS
PTHR10566:SF10 Panther
ABC1 - RELATED
JGI ISS
PF03109 PFAM
ABC1 family
JGI ISS
UniRef100_G7J980 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AarF domain-containing protein kinase, putative n=1 Tax=Medicago truncatula RepID=G7J980_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JU46 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU46_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06260
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06260
Paralog Evidence Comments
Glyma06g06321 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g059100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06260
Coding sequences of Glyma04g06260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06260.1 sequence type=CDS gene model=Glyma04g06260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGAGGAATGCCTCCGCCGCTCTCTTCCGTCATCGCGCTGCCATTCTCAAGTCCGCACATTTACATCACGAATGTTTCACTGAAATTATCTTACGCAAATGCGTGCCGTTGGATTACCGTTGCTCGTCTTTCTTATGGCACCGCAATTCATATTCAACTGGTTTCACCAGCGTGCATGGCGAAACGCCCTCTGCTGAGTATGCGAGGATGAGGAGGGAATCACTGGAAAGTAAATTCGGGCATGCTCTTGGAACTTATAGCTCTAAGAGTTTCAATGCTATCTACCGATTTGGCCCCTTTTTGGCTTTGTACAGGGCAACAATTATTTCATTTCATGTGTTAAGGCTAATGATATGGCAATTATTCGTTCAAGACATGGGAAAACGAGCAGTTAAGTTTCGTGAAACTCTAATACGCTTGGGTCCTTTCTACATTAAGCTTGGGCAGGCATTGAGCACCCGGCCTGACATATTACCAACAGTATATTGCCAAGAACTTGCCAAGTTACAGGATCAAATACCTCCGTTTCCAACTGATGTTGCAATCAAATCTATTGAGAACCATTTGGGTGTTCCTATTAATGAAATTTTTAAGGATATCAGCCCAGCACCTATTGCAGCAGCATCCTTAGGGCAAGTATATAAAGCTCACCTGCATTCTGGAGAGCTTGTAGCTGTAAAAGTACAGAGGCCTGGTATGTCACTTTCATTGACCCTTGATGCTTTGTTATTCAATATGATTGGGGGTCAATTAAAGCGGTTTGCCAAGGCTCGAAAAGATCTTTTGGTGGCAGTAAATGAAATGGTCAGGCACATGTTTGATGAAATTGATTATGTCCTAGAGGGCAAAAATGCTGAGCGCTTTGCTTCTCTTTACTGTTGGTCTGCAAGTGGGGTTAAGCAAAAAAAATCAAATTCCGTCAAAGCTCCAAAAATATATTGGGATTACACATGCTCCACTGTGCTAACTATGGAGTGGATAGATGGAATTAAGCTTACAGATGAAACAGGTTTGAATAAAGCTTCTTTGAACCGAAGGGAACTCATTGACCAGGGATTATACTGCTCTTTGAGACAAATGCTTGAGGTTGGTTATTTCCATGCTGATCCTCATCCAGGAAACCTTGTTGCAATAAATGATGGATCTCTTGCGTATTTTGACTTTGGAATGATGGGGGATATTCCGAGGCATTACCGGATTGGACTTATTCAAATGATTGTTCACTTTGTTAATCGTGATTCTCTGAGCTTGGCAAATGACTATCTTTCTTTGGGATTTATTCCTGAAGGGATTGACATACATTCAGTTTCTGATGCGCTGCAAGCATCATTTGCTGATCGGACCACTGAATCTCAAGATTTTCAGGGAATTATGAACCAACTATATGATGTCATGTATGAATTTAACTTCTCCCTTCCGCCAGACTATGCTCTTGTGATAAGAGCATTGGGATCACTAGAAGGCACAGCTAAAGCTCTGGATCCTGATTTTAAAGTCATTCAGAGTGCATATCCTTTTGTCATTGGGAGACTTATTGCAGACCCAAGCCCTGATATGAGAAGAATTCTGAGGGAACTTCTCATTCGTAACAATGGATCCATAAGGTGGAATCGTCTAGAACGCTTGGTAGCAGCAATCTCTGAACAAGCTTCTGAGATAACTGGAGACCCTAGTTCTGAAAAGTTTTCAAGTTCTTCTGTTTGGAAATTATTTGACATGCATGCTGTTGTTGATTCCACTGAAGATCTTTTATTATTCATATTATCAGACAAGGGTCTTAGAGTGCGTCTTTTCCTTCTTCGGGATATAGTAGAAGCAGCTGATGTGTTTCTGCAAGATGAAGTGATTGATTGCGCATTAAATGAGAATCCTCAAGGCCAGAGGACATTACTATTTGAGGAGCGTGCTATCCTTAGTAGGATTGGAAAAGGCTTTGAATACTTATGTGAGGTGGTGAAGTTGGCGCCAGGGGAGTGGACAGCAATGCTTATTCGGATGGCAGGGAAGCCCGAGGTTCATAAATTTGCTTTAGACATTATTTCAGCTTTAGCTTTGCATTCTAGTCACAAATTACAGGTAGCTTGTTGGCTCTATTTGTCGAGACTTCTTCACAAATTTACAAATTGA
Predicted protein sequences of Glyma04g06260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06260.1 sequence type=predicted peptide gene model=Glyma04g06260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTRNASAALFRHRAAILKSAHLHHECFTEIILRKCVPLDYRCSSFLWHRNSYSTGFTSVHGETPSAEYARMRRESLESKFGHALGTYSSKSFNAIYRFGPFLALYRATIISFHVLRLMIWQLFVQDMGKRAVKFRETLIRLGPFYIKLGQALSTRPDILPTVYCQELAKLQDQIPPFPTDVAIKSIENHLGVPINEIFKDISPAPIAAASLGQVYKAHLHSGELVAVKVQRPGMSLSLTLDALLFNMIGGQLKRFAKARKDLLVAVNEMVRHMFDEIDYVLEGKNAERFASLYCWSASGVKQKKSNSVKAPKIYWDYTCSTVLTMEWIDGIKLTDETGLNKASLNRRELIDQGLYCSLRQMLEVGYFHADPHPGNLVAINDGSLAYFDFGMMGDIPRHYRIGLIQMIVHFVNRDSLSLANDYLSLGFIPEGIDIHSVSDALQASFADRTTESQDFQGIMNQLYDVMYEFNFSLPPDYALVIRALGSLEGTAKALDPDFKVIQSAYPFVIGRLIADPSPDMRRILRELLIRNNGSIRWNRLERLVAAISEQASEITGDPSSEKFSSSSVWKLFDMHAVVDSTEDLLLFILSDKGLRVRLFLLRDIVEAADVFLQDEVIDCALNENPQGQRTLLFEERAILSRIGKGFEYLCEVVKLAPGEWTAMLIRMAGKPEVHKFALDIISALALHSSHKLQVACWLYLSRLLHKFTN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
