Glyma04g06210 - SoyBase

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Report for Sequence Feature Glyma04g06210

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4749579
stop:	4756029
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10730	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:3390822-3392947 REVERSE LENGTH=287	SoyBase	E_val: 1.00E-159	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG4288	KOG	Predicted oxidoreductase	JGI		ISS
PTHR12126	Panther	NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED	JGI		ISS
PTHR12126:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_D7M301	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ coenzyme binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M301_ARALL	SoyBase	E_val: 4.00E-160	ISS
UniRef100_I1JU43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU43_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06210

Paralog	Evidence	Comments
Glyma06g06250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g058600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06210

Limit To All Plant Sequences

>Glyma04g06210.1   sequence type=CDS   gene model=Glyma04g06210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGACAGTGATTTCGCGCTTGATCCATTCCACGCCTTCCATTTCCAGGCTCAATGCCACGGTAGTGTCAATCAGCGGGAGAAATCTCTGCACAGATTCTAACAAAGTTGATGGGCCATTCAAAGTTGAAGAAGCAGAGACTGTAAATGTGCCTCCACTCCCAACAGAAAAGTTGCTTGTGTTGGGAGGGAATGGGTTTGTTGGATCACACATTTGTAGAGAAGCCTTAGACCGTGATTTGTCTGTTGCGAGTCTTAGCAGGTCTGGTAGGTCATCCCTGCATGATTCCTGGGCTACCAATGTTGCTTGGTATAAAGGGAATCTCCTTTCAACTGATTCATTGAAAGAAGCTCTGAATGGGGTCACTGCTGTTATCTCATGTGTTGGTGGTTTTGGCTCCAACTCTTACATGTACAAAATTAATGGGACTGCTAACATCAATGCAATTAGAGCAGCTTCAGATCAAGGTGTTAAAAGATTTGTCTATATCTCTGCAGCTGACTTTGGTGTAGTAAATTACTTACTGCGGGGGTATTATGAAGGAAAGAGAGCTTCTGAAACAGAGCTCCTGACCAGATTCCCATATGGAGGAGTAATTCTGAGGCCAGGATTTATTTATGGTACTCGAAGTGTTGGGAGTATGAAGATACCCCTTGGTGTAATTGGATCTCCATTGGAAATGGTTCTCCAAGTTGCTAAACCATTGAACCAGATCCCACTTGTTGGGCCTCTATTGACACCTCCTGTCAATGTTACTGCGGTGGCAAAAGTTGCTGTTAGAGCTGCTACTGATCCTGTTTTTCCCCCGGGGATCATTGATGCTTATGGAATACAACGTTACAGTCAGCATAAATCAAACTAG

Predicted protein sequences of Glyma04g06210

Limit To All Plant Sequences

>Glyma04g06210.1   sequence type=predicted peptide   gene model=Glyma04g06210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTVISRLIHSTPSISRLNATVVSISGRNLCTDSNKVDGPFKVEEAETVNVPPLPTEKLLVLGGNGFVGSHICREALDRDLSVASLSRSGRSSLHDSWATNVAWYKGNLLSTDSLKEALNGVTAVISCVGGFGSNSYMYKINGTANINAIRAASDQGVKRFVYISAADFGVVNYLLRGYYEGKRASETELLTRFPYGGVILRPGFIYGTRSVGSMKIPLGVIGSPLEMVLQVAKPLNQIPLVGPLLTPPVNVTAVAKVAVRAATDPVFPPGIIDAYGIQRYSQHKSN*

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