Glyma04g06200 - SoyBase

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Report for Sequence Feature Glyma04g06200

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4746390
stop:	4748764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G10720	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr4:6607879-6609358 FORWARD LENGTH=445	SoyBase	E_val: 1.00E-98	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
UniRef100_G7J969	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J969_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JU42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU42_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06200

Paralog	Evidence	Comments
Glyma06g06220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g058500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06200

Limit To All Plant Sequences

>Glyma04g06200.1   sequence type=CDS   gene model=Glyma04g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGACTCATTAATTTCAGCTGCGCAAGTCGGTGACATAGACTTGCTCTACAAATTAATTCAGATGCAACCATATGTGTTGGAGCAAACAGATTTCATGCCATTTGTTGATACACCTTTGCATGTTGCAGCTGCTGCTGGCCATGCAAGTTTCGCCACTGAGATCATGAGACTCAAGCCTTCATTTGCATGGAAGCTGAATCCGTGTGGCCTTAGCCCCATGCACCTTGCTTTGCAGAACAAGCATTACAGAATGGTGTGTCGCTTTGTGGACATCAACAAAGACCTTGTTAGAGTCAAAGGGAGGGAGGGTCTCACTCCTTTGCATATTGCAACTCAAACCGGGAGAACTGATCTTGTGGCCAAGTTCTTGTCGGCTTGTCCTGGTTCCATTGAAGATGTGACTGTTCGAAGTGAGACTGCGTTGCATATTGCTGTGAAATATAATCAGTTTCGGGCTTTGGAGGTCTTGGTTGGATGGCTTCAGAGAAACTGCCAAAGACATGCTCAGGACCGGGAAAAAAGAGTTTTAAATTGGCAAGATGAAGCAGGCAACACCGTTCTTCACCTTTCAGTTCTCAAAGGCGTCACACAGGCAGTTGGGTTGTTGATAGACAGCAACATAAACAAAAATGCGAAGAATTTTGAGGACTCAACAGCGTTGGACATGGTGGAGATTAATCAAACTACGGCTCAAAGTGCAGAGATCAGAGATGAGTTAGTTAGAGGAGGAGCTTTACGTGGCTTCTCACTAGCTAATGCTCCACTCCTAGAAGAAGAGCTAAGAGCAAAAATCACATTCAATGAGAGAATAGCAATCTTCGTTACTCGGCTCAGAAAGAGAATATCAATCGACACACGCAATGCTTTGTTGGTGGTTGCTATTCTCTTCGTAACAAGCACATACGGGGCAGTAATTAGCCCCCCAGGTGGAGTTTACCAAGGTGAGGGTAGTAGGGTCACAACCTCAAAGAAGACTAGCGCATCATTGCATCCCCGTGACTACGCAACCCCAGAAATTGTAGGAAAAGTGGTGATGAAAATGCAAACCTTCTTCTGGTTCTGGTCCTTCAATACCTTGTCCTTTTATCTATCAATTTTGATGATATGTTTGCTAATGCCACGAGGGCGCATAAGCGTTATAGTGACTTTCCCACTTTCTATCTTTACTGGGTGCTACGTGTTCTCCATGATGGTGATATCACCCAGTCTCAGGTTAAACACTGCCACTGTGGTTATGCCATGCATATTTATAGTATTTTACTGTTGGGGAAGTTGGATATACATTAGGTTAGCCAAAAAACTTAAAGGATACGGTCATAAACAGAAAGACACGTTCAAGTTTTCAGGAGGAAACAGATGGTAA

Predicted protein sequences of Glyma04g06200

Limit To All Plant Sequences

>Glyma04g06200.1   sequence type=predicted peptide   gene model=Glyma04g06200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDSLISAAQVGDIDLLYKLIQMQPYVLEQTDFMPFVDTPLHVAAAAGHASFATEIMRLKPSFAWKLNPCGLSPMHLALQNKHYRMVCRFVDINKDLVRVKGREGLTPLHIATQTGRTDLVAKFLSACPGSIEDVTVRSETALHIAVKYNQFRALEVLVGWLQRNCQRHAQDREKRVLNWQDEAGNTVLHLSVLKGVTQAVGLLIDSNINKNAKNFEDSTALDMVEINQTTAQSAEIRDELVRGGALRGFSLANAPLLEEELRAKITFNERIAIFVTRLRKRISIDTRNALLVVAILFVTSTYGAVISPPGGVYQGEGSRVTTSKKTSASLHPRDYATPEIVGKVVMKMQTFFWFWSFNTLSFYLSILMICLLMPRGRISVIVTFPLSIFTGCYVFSMMVISPSLRLNTATVVMPCIFIVFYCWGSWIYIRLAKKLKGYGHKQKDTFKFSGGNRW*

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