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Report for Sequence Feature Glyma04g06190

Feature Type:gene_model
Chromosome:Gm04
Start:4738734
stop:4745035
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10720AT Annotation by Michelle Graham. TAIR10: histidine kinase 5 | chr5:3386835-3390541 FORWARD LENGTH=922 SoyBaseE_val: 0ISS
GO:0000160GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0009788GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010105GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0018106GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0070301GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to hydrogen peroxide SoyBaseN/AISS
GO:0071219GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to molecule of bacterial origin SoyBaseN/AISS
GO:0071732GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide SoyBaseN/AISS
GO:0090333GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal closure SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0000156GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0519 KOG Sensory transduction histidine kinase JGI ISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF141Panther JGI ISS
PF00072PFAM Response regulator receiver domain JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
UniRef100_G7J964UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hybrid signal transduction histidine kinase K n=1 Tax=Medicago truncatula RepID=G7J964_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MX26UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MX26_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma04g06190
LocusGene SymbolProtein Name
HK02 Root Exclusive, Histidine Kinase

Expression Patterns of Glyma04g06190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06190
ParalogEvidenceComments
Glyma06g06180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g058400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g06190
>Glyma04g06190.2   sequence type=CDS   gene model=Glyma04g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCTCGAGATGGAGAATGATTGTATAAAGGACATGGACATTGAGGTCGTTCCTTCAATGTGGCCTGAAGATATTGGAATGGAGGTTGGGAAGCAATTTAACATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGCCTCATGGAGCTTACAAATTTTACAGAAAAGGGCTCTTCTCAGTTGGCCTACCTAATGAAACAATGGGAGTACAAACAGGCCAATGTTGTGCGTCTCCTCAGGGAAGAACTTGACAATCTAAGCAAGCAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACGACATGGGGCAGATAAACGTCCAGTTTCTATATTGGATGATGTTTATGATGGTATATGGCAAGACATACCTTGCAGGAGAAGTGATGTTGTGGTTGAAAACAAGAGGAGTGAGATTGATGCTGAGTATGACACTGTCATGTGCTGGAAACAGCGAGCGTTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATACTCGAAGAAAAGTTGCAAGAAAGAATAGCAAACATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAGATACTGAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTATTGTTATTGGCCATCAGGACAAAGAATTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATCGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAGTTTAAGAGAGAGGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCAGGGGAGACAATAGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACGAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTCGATCTTTCCAAGGTTGAGTCAGGAGTGATGAAATTGGAAGCTACAAAGTTCAGGCCAAGAGAGGTAGTCAGGCATGTACTCCAGATCGCTGCGGCCTCATTGCAAAAAATACTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATTGAGGTCATTGGTGATGTTTTAAGAATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTCACCCATGAAGGCAAAGTTGGAATAAATCTTTATGTTGTGTCAGAGCCTACTTTTGCAAAAGCAGAATGCATCCAAAAGATGACTTCAAGCCATTCAACTATTTCAGTGAATGGTGTAAAGGAAGAGAAATATCTCTCAAAACCTCAAAGTGACAGTGATAGAAATCTTCTTGATGGTTGTCAAAAACATGATGACCATCCCAGCCAAAACCATGCATTCCATGAAGAATGTAGATCTCCTGTCAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTAATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATACTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCTGGATGAGCTCTCTGACGTGGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATCTAGCAGGACACATAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAGCTTGGTGGATTTTCTGAGAGTTTGTATTCATTCCCCTCCAATGATATCATGTCAAAAGGGACATGTTCAGCTGATGATGCATCTTCTGTGGTTGAGGTTCCAGAGATGTCTGAATCGGCTAGTTCATCTGGTCACAGCCAAAAAACTAAGTCAAATGGAGAAATGTCTGAAGCAAAGTCAAATGAACTACAACAAACAACATGTCAGGGTCATGGGAAGACAAACACAACTTTCCAATGCGTTACAAACAGCAGTGTATCTGAAGTAACCAAATCCACAATAATACCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAACAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCCGTACGTGCAGTTCAGCGTCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAGGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTGTACAAGATCCAGATTGTGAATGTTCTGTACCATCTACAAAGCGGATCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGGCATTCCAAAAACTGAAAGAATGTATTGAACAATACCTTGTAAATTTCAGCTAG
Predicted protein sequences of Glyma04g06190
>Glyma04g06190.2   sequence type=predicted peptide   gene model=Glyma04g06190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLEMENDCIKDMDIEVVPSMWPEDIGMEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERHGADKRPVSILDDVYDGIWQDIPCRRSDVVVENKRSEIDAEYDTVMCWKQRALHSEKQLEASIQREQILEEKLQERIANIERQSSPVEELSQILKRADNFLHFILQNAPIVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQIAAASLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVSEPTFAKAECIQKMTSSHSTISVNGVKEEKYLSKPQSDSDRNLLDGCQKHDDHPSQNHAFHEECRSPVKSECSMNGDTEEQPNSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDLDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTHKLLTHKIGYTSSHKLGGFSESLYSFPSNDIMSKGTCSADDASSVVEVPEMSESASSSGHSQKTKSNGEMSEAKSNELQQTTCQGHGKTNTTFQCVTNSSVSEVTKSTIIPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSVQDPDCECSVPSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVAFQKLKECIEQYLVNFS*






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