Report for Sequence Feature Glyma04g06170
Feature Type: gene_model
Chromosome: Gm04
Start: 4720250
stop: 4725994
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G24640 AT
Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 19 | chr2:10475613-10479341 REVERSE LENGTH=672
SoyBase E_val: 0 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004197 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity
SoyBase N/A ISS
GO:0004221 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG1865
KOG
Ubiquitin carboxyl-terminal hydrolase
JGI ISS
PTHR24006 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24006:SF250 Panther
JGI ISS
PF00443 PFAM
Ubiquitin carboxyl-terminal hydrolase
JGI ISS
PF01753 PFAM
MYND finger
JGI ISS
UniRef100_B9RNQ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-type endopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RNQ1_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1JU40 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU40_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06170
Paralog Evidence Comments
Glyma06g06170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g058300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06170
Coding sequences of Glyma04g06170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06170.1 sequence type=CDS gene model=Glyma04g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTCTCTCGGGAGGAGTGTCCGATCTCAAATGGATCCTCCAATTCGTATTCTACGCGTTCGTCTTGGCGATTGGACTGCACGCGCTTCTCAAGAACACCGCCTCCAAGTACTTCGACCTTGACGCCACTTTCCACGCTCACGCTATTCCTGGCCTTCTCATGGACCATTCTCTCTGCGCCGTTTGTCGCAACCCCGCCAACAAGAAGTGTTCGCGATGCAAATCCGTTCGATACTGTTCACAAGCATGCCAGCAGATGCACTGGAAATCCGAGCATAAGGTGAGATGCAAGGAGTTTCAGGGCAGCAGCACCAGTGTGATGATGAATTTGGCTCAAACTGAAGTCACTAATCGAGTTTTCAAGGCTTCTTCTGCTGCTGTGAATAGGAGTACATGTACTTCTTCAATTGCCCTCATTCCTGAATGCGGTCGTGGAACATCCAGGACTATCAAGCAGCCTAAAAGTGTTCTCTTTCCTTATGACGAATTTGTCAAATTGTTTAACTGGGACAAACCAGGATTTCCTCCTTGTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCACTTATTGCCTTTCTATTGGAGAAGGGTCACCACAGAGAATGCTGCCATAATGATTGGTGCTTTCTGTGCGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTCAGGCGTTTTCTCCGATGAATATTCTCTCTCGTTTGCCCAATATCAGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCCCCTAGGAATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAATGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTGACTGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAATTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTCAAGGCATGGAAACGTCTCACAGTGAAACAAGCTCCAAATATTCTCACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAGCTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGTCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATATGCTGTCGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAAGATTTCTGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTTCTTTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATTGAATCGTCAGAGACAGCAGAAGTTCAAACAATCAAATCGGAGGTGCCTCCTGGCCCGACTGAACAAGCTGAATGCCTCTCAGATATGAAAACTGAGACTTACAGTGGAGGATGCGAGGCTTTTCCATTTGACAGTAGTCTAGAGTTGAAGGTTTCTTGCTGTGAAAATGTGTCTTTGACCGAAATGAACTCTGAAGTTAAAAGAGAGCAGTTCAAGGATGTGGACATTATTGATGTTGCTAATGAGTCTTTCTGTAATGGTGTTGAATCATCTTATATGCATGATTCTGAAGCTGTCAAAGATTCGGGGGATATAGATTCCAACGGATCAAAGACATGCTCTTCTTCTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAGTGATATGGCTAAGTCAAGCCCTTCTTCATGTTTGCCTGATGGCTTTTCTAGTGTTGATAAGGATTCTTCTGTTTCAGTGGATTATCGAAACACAAGGAAAGATTCAGATTCAGACCATAAAGATGTGGTTAAATGCAAGGTAACTTCAAATGGCTTTGCAAATTATAGCAATGGATATGCCAGTGCAAATAAATATGATGATGTCCCAGTGGAAGATGGTGATGGTTGTTTTTCCACTGAAACACCCTCAGCTAAAATGCATCAATTGAAGGAGAGATTGGCTTCTGAAAATGCTGAAGTTGACAAAGGAAATGGAGTTAAGAGAGTAGAAATATCAGGGAATAAGTTAATAATTTAG
Predicted protein sequences of Glyma04g06170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06170.1 sequence type=predicted peptide gene model=Glyma04g06170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLSGGVSDLKWILQFVFYAFVLAIGLHALLKNTASKYFDLDATFHAHAIPGLLMDHSLCAVCRNPANKKCSRCKSVRYCSQACQQMHWKSEHKVRCKEFQGSSTSVMMNLAQTEVTNRVFKASSAAVNRSTCTSSIALIPECGRGTSRTIKQPKSVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAFLLEKGHHRECCHNDWCFLCEFETHVEKVRLSSQAFSPMNILSRLPNISGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKVVPPRNQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKQAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIESSETAEVQTIKSEVPPGPTEQAECLSDMKTETYSGGCEAFPFDSSLELKVSCCENVSLTEMNSEVKREQFKDVDIIDVANESFCNGVESSYMHDSEAVKDSGDIDSNGSKTCSSSLEEISVCMEEQDDSDMAKSSPSSCLPDGFSSVDKDSSVSVDYRNTRKDSDSDHKDVVKCKVTSNGFANYSNGYASANKYDDVPVEDGDGCFSTETPSAKMHQLKERLASENAEVDKGNGVKRVEISGNKLII*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
