Glyma04g06160 - SoyBase

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Report for Sequence Feature Glyma04g06160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4714295
stop:	4716517
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33160	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr4:15994160-15995533 FORWARD LENGTH=457	SoyBase	E_val: 6.00E-144	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_B9HCN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9HCN7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1JU39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06160

Paralog	Evidence	Comments
Glyma06g06160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g058200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06160

Limit To All Plant Sequences

>Glyma04g06160.1   sequence type=CDS   gene model=Glyma04g06160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGTAATGATCAGCATGTAAGTGTAAACTTGAAGAGAAAATCACCAGAAAATGGAGAACGTGTACTCTTCAACACCTTTTCTCTTGATGACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTGAATTCTGTGTGCAAAAGATGGAAATCAGTAGCTGCTTCTGCCAGTTTCAAGCTTGCCTGCTCTCACATTCCCTCAAGGGATCCTTGGTTTTTAATGGTTGCTCCCAACCTTAACCAATCTGTTATCCTTGACTCTGCTGAAAGCACTTGGAAGAGGCTAAATCACCCCCCTCTTCTGCAAGAAGAATCTAACCAAGATTGCGTGCCAGTTGCGGCATCCGGGGGTTTGATTTGCTACCGTAAATCATCAGGAAACTTCATTGTAACCAACCCCGTGACAGGTTCTTGTAGAAAACTCCCTCCACTGCAATTTGCCTCACAAAACCAACCACTCAATGCCATTGTGATGAGCACAAGTTCCAAAGACCAACTCTCCTTCAAAATTGTGCTAGTCTTTGGTGAACTTCCAAATCTCTTGTTTAAAGTCTACAATTCAGGTTCTAACTGTTGGGAGGGTGAGACAGCATTGAGGAGAAAGACTGAAGACAATTCCATTGAATATGATTCCACTGATGACAATGTTGTGTACTTCCTCAGCAAGGCTGGATTTGTTGTGGCGAGCAACATGCAGAGAAGCCCCTCTAAGCAATTTTCATCTGTTATTACTAACAAAGATGGTCAAGAGATTGTCTATTTTCTTAGCTCCTCAGGGAATGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTTAGTGAGTATTCCATTGATGTTGTGGAATGCAATGGGGAGATGCTGGTTGTTTTGTTATCAGAATTCTTAGAAATTGCAACTCTTAGGGTGTGGAAATATGATGAAGCTAGTAGAGGGTGGCATCAGATTGCAGCAATGCCTGCAGCAAATTCTCATGAGTGGTATGGGAAGAAGGCAGATATTAACTGTGTTGGTGCTGGTAACCAAATCTTCATATGCTTGAACTCCCCTGAGCTATGCACTTATGTTGTGTGTGATTTGGAGACCAACAAGTGGGTTGAATTTCCAAAATGTTGCATAAATGGAGAAGTCATAGACTTTATGTCTGCCCTTTCATTTGAGCCTCGGATTGAGGCTTCAGTGTGA

Predicted protein sequences of Glyma04g06160

Limit To All Plant Sequences

>Glyma04g06160.1   sequence type=predicted peptide   gene model=Glyma04g06160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECNDQHVSVNLKRKSPENGERVLFNTFSLDDLNEDLFERILSWLPTSTFFRLNSVCKRWKSVAASASFKLACSHIPSRDPWFLMVAPNLNQSVILDSAESTWKRLNHPPLLQEESNQDCVPVAASGGLICYRKSSGNFIVTNPVTGSCRKLPPLQFASQNQPLNAIVMSTSSKDQLSFKIVLVFGELPNLLFKVYNSGSNCWEGETALRRKTEDNSIEYDSTDDNVVYFLSKAGFVVASNMQRSPSKQFSSVITNKDGQEIVYFLSSSGNVVACNLTCKCFFEYPRLLPVFSEYSIDVVECNGEMLVVLLSEFLEIATLRVWKYDEASRGWHQIAAMPAANSHEWYGKKADINCVGAGNQIFICLNSPELCTYVVCDLETNKWVEFPKCCINGEVIDFMSALSFEPRIEASV*

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