Report for Sequence Feature Glyma04g06120
Feature Type: gene_model
Chromosome: Gm04
Start: 4689196
stop: 4696612
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g06120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G21280 AT
Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr5:7264094-7265514 REVERSE LENGTH=302
SoyBase E_val: 3.00E-19 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
UniRef100_I1JU37 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JU37_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g06120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g06120
Paralog Evidence Comments
Glyma06g06130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g06120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g057900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g06120
Coding sequences of Glyma04g06120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g06120.1 sequence type=CDS gene model=Glyma04g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATTAGATAGGCTCAGTAAGCTTGAAGAACCTCCTCTCTCTGGTGCTTGCATTCGTGGCCTAGTGAAACAACTAACCACCTCTAGAACAAAACACTTCATGAACCCAAAAGACCAAAATTGTGTTGTGAACGGTGGTGTTTCCCATGGTCAAAATTCAACAAAACATGGCAAAGTTGCAGATGCTCGTCAGGCACAGCAGTCCTCACAACCCCAACAACAAAAAAAACAAGTTAGAAGGAGACTCCACACCAGTAGGCCTTATCAGGAAAGGCTTTTGAATATGGCTGAGGCTCGGAGGGAGATTGTCACTGCCTTGAAATTTCACAGAGCAGCTATGAAAGAAGCAAGTGAACAGAAGCAGCAACAGCAACAAGCCCAAGAACAGCAGCAAAGGCCATCAGTATCACTCCAGCCATCCCAGTTCCCAAGTTTTAACCAAGATGGAAAATTTAAGTCTAGGAGAAATCCTAGAATTTATCCAGCATGCACAACCAATTTTTCTAGTTACATGGACATGGATGATTTATCCCATTCATGCTTATCCCAACGTCCTCCTTTGGTTCCAAATTCTTACACCTGGCCTGCTGCTTCCCAAATTACTCCACCTCCCCTTATGGCTGAAAACCCCAATTTCGTACTTCCAAATCAGACTTTGGGATTGAATCTCAATTTACAAGATTTCAACAACTTAGATGCTACCCTTCACCTCAATAACTCATCCTCCTCCTCCTCCCCCTACTCATCTGCAACCTCATCTTCTGCTCCACTGGAGCTTCCTTCTGTTGGAATATCACAGGGAGAGGGGCTTTCTTCATTGGTGGATACTATTGAATCCAATGCCGCAACCCAGGTCACTGGAGGCTTACACACAGCCATGGACGATGAGGGTATGGCAGAGATCAGATCATTAGGAGAGCAATATCAAATGGAATGGAATGACACCATGAATTTGGTCAAATCAGCTTGTTGGTTCAAGTACTTGAAAAACATGGAACATAGGGCACCTGAAGCCAACACTGTAGATGTTGCATACAATAATTTTGACCAGCTTCTGGAGTTTCCAGCTTGGTTGAATGCGAACGATAGCTGCTTAGAGCAGTGCTCGGTGGATTATTTTCAAGAGTCTTCCTTGCCTTGTTTGGATATTGGAGATATTGAAAGTATGGATGACGATTGGTTAGCGTGA
Predicted protein sequences of Glyma04g06120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g06120.1 sequence type=predicted peptide gene model=Glyma04g06120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELDRLSKLEEPPLSGACIRGLVKQLTTSRTKHFMNPKDQNCVVNGGVSHGQNSTKHGKVADARQAQQSSQPQQQKKQVRRRLHTSRPYQERLLNMAEARREIVTALKFHRAAMKEASEQKQQQQQAQEQQQRPSVSLQPSQFPSFNQDGKFKSRRNPRIYPACTTNFSSYMDMDDLSHSCLSQRPPLVPNSYTWPAASQITPPPLMAENPNFVLPNQTLGLNLNLQDFNNLDATLHLNNSSSSSSPYSSATSSSAPLELPSVGISQGEGLSSLVDTIESNAATQVTGGLHTAMDDEGMAEIRSLGEQYQMEWNDTMNLVKSACWFKYLKNMEHRAPEANTVDVAYNNFDQLLEFPAWLNANDSCLEQCSVDYFQESSLPCLDIGDIESMDDDWLA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
