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Report for Sequence Feature Glyma04g06080

Feature Type:gene_model
Chromosome:Gm04
Start:4630200
stop:4635738
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g06080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27640AT Annotation by Michelle Graham. TAIR10: translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712 SoyBaseE_val: 0ISS
GO:0006413GO-bp Annotation by Michelle Graham. GO Biological Process: translational initiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005852GO-cc Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
KOG2314 KOG Translation initiation factor 3, subunit b (eIF-3b) JGI ISS
PTHR14068Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (EIF3)-RELATED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
PF08662PFAM Eukaryotic translation initiation factor eIF2A JGI ISS
UniRef100_B9RNS0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RNS0_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KJQ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJQ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g06080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g06080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g057600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g06080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g06080
>Glyma04g06080.2   sequence type=CDS   gene model=Glyma04g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAACACGAAAAGCGTCGGATAAGGGGATGTGACCTCGTTCCGAGGGAGAAGTTTGAGAAGCTGGAAGGAGTGGTTCGGAAAATTTATAGTCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCTATTTATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGGAAGCTGAGCTTGCTAAGGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGGTGCCTAATGAGTGGGCTCCTCCTGAAACTAAGCCATATACTCCAGGGGAAAATCTTCAAGACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTCTATGGAACGATGCCAGGCATTTAAAGCCTGATCCCGTTTATAAGCGAGCATTTGGACAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATACTTGGCCACTGTTCATAGACAGGGGGCAGCAGTCTGGGGAGGTGCTGCCAGTTTCAATAAACTTATGCGTTATTCGCATCCTCAGGTAAAACTTATTGATTTTTCGCCTGGTGAGAAGTATTTGGTAACATATATTAGCCATGAACCAAGCAATCCCCGAGATGCCAATAGAGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGGGACTTAGGAAGTGCTGATGATTTTGCAGTCGGAGGTGCTGGGGGTGTCACTGGAGTTTCATGGTCTGTTTTCAAATACTATTTAGTAAAGGTTGAAAATATAATGGATTTCTGCTGGTCTTCTACTGATCCAATTATTGCTCTTGTTGTTCCTGATATGGGAGGTGGTAACCAGCCTGCCAGGGTTAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCGGTGACTGCAAGATCACATATACAGGCTTTGAGCTTTTCCGTATAAAAGAACGGGATATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGATAAGATCATAGCGTTTGCTTGGGAGCCAAAGGGCCACAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTAATGTCATTTACTCCATGCGTACTGGTCAGAACAGCCAAGTTTCAAAACTCACTACTCTGAAGGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCTGGTCGCTACATTGTACTAGCTGGGTTGAAAGGCTTCAATGGACAGTTGGAATTTTACAACGTTGATGAACTTAAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGAATGGTTTCAGTATGGTCTTTCAATGGCAAACATCTATATCGGATTCTGAAGGATCACTTATTTCAGTTCTTATGGAGACCAAGGCCGCCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGCATATACGAGGCAGAAGATCAAGATGTTTCGTTGCCGCTGAGTGAGCAGGAGCGTGAGAAGTGTAGGATGTTGAAAGAAGATTGGGACAAGTGGGTTAACGAATGGAAGCAGATCCACGAAGAGAGTTTACAGAGGCAAAAGCTCAGGGATGGAGAGGCTAGCGATGAAGAGGAAGAATATGAGGCAAAGGACATGGAGGTGGAGGAAGTGATGGATGTAACAGAAGAGGTCCTTCACCTTGAGTATGGTCATTGGTCAAGAGTTTAG
Predicted protein sequences of Glyma04g06080
>Glyma04g06080.2   sequence type=predicted peptide   gene model=Glyma04g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQHEKRRIRGCDLVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPIYPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFDRFMKVPNEWAPPETKPYTPGENLQDWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFGQSFVQWSPLGTYLATVHRQGAAVWGGAASFNKLMRYSHPQVKLIDFSPGEKYLVTYISHEPSNPRDANRVVINIFDVRTGKVMRDLGSADDFAVGGAGGVTGVSWSVFKYYLVKVENIMDFCWSSTDPIIALVVPDMGGGNQPARVSLIQIPSKEELRQKNLFSVGDCKITYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPNVIYSMRTGQNSQVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELKTMATAEHFMATDIEWDPTGRMVSVWSFNGKHLYRILKDHLFQFLWRPRPPSFLTPEKEEEIAKNLKKYSIYEAEDQDVSLPLSEQEREKCRMLKEDWDKWVNEWKQIHEESLQRQKLRDGEASDEEEEYEAKDMEVEEVMDVTEEVLHLEYGHWSRV*






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