Glyma04g06071 - SoyBase

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Report for Sequence Feature Glyma04g06071

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4618305
stop:	4624254
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06071

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43930	AT	Annotation by Michelle Graham. TAIR10: BRCT domain-containing DNA repair protein \| chr3:15760948-15763263 REVERSE LENGTH=502	SoyBase	E_val: 7.00E-160	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13561	Panther	DNA REPLICATION REGULATOR DPB11-RELATED	JGI		ISS
PTHR13561:SF20	Panther		JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
UniRef100_G7J947	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA topoisomerase 2-binding protein n=1 Tax=Medicago truncatula RepID=G7J947_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233980A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233980A related cluster n=1 Tax=unknown RepID=UPI000233980A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06071

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g06071 not represented in the dataset	Glyma04g06071 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06071

Paralog	Evidence	Comments
Glyma06g06070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06071 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g057500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06071

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g06071

Limit To All Plant Sequences

>Glyma04g06071.2   sequence type=transcript   gene model=Glyma04g06071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAATCCTCCAAACTTTTTCAAAATAAAAGCCTGCTCTCTGTTCTCTCTCTTCTTTCTATTCAATTTGGGTTGAGTTAAGTTGAGACTTGAGAGGTGTGATTCCCGTTACTCCTCACTACTTTGACCCGCTTTTTGTTTCTCTCTCTCTCTCTCTCTCTCTTTCATCCCCCTACTTCCATCTCAGACATCACATGCAATTTACAAAAGCAGGCGTTTTTTTTTTTTTAATTTAAAAAAACCACTATAACAAGTAGAAACTATAATGGTATGGGGGCACTATTTTCTTTCGCGTACTCAAGCAGAAAAGAAGAGTGAAAACTCTGACTGTGACTCCTCGTCAGAGCAGAGCACCACATTCAAAAAAATTCCCTTTTCTCATTGTCCTCCCTCCCTCTGCAAAACAAAAACAAACACATCTTAAAAATTCACTCTGTGTCTCCCACTCCTCAACAACCCCCTTTACTCGAGATTCCGTTTTTTTTTCCTCACAGCCTTTGCAACTTGTTGAAAATTTCAATTTTGGAATCGTTTCACCACTTAACGTGATCTGGGTTTGTTCCATATAAAGTTCAGCTCTTCACAGATCCAACATTTTTTTATTTCCCCTTTTAATTCATCCATTCATTGTTTCTATTGAATTATCAGAAACCCGTTTTAATGAATTTCAAGTCATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCCTTTTGGATTTTCAATTGCTGAGTGATGAATAGATTGATGCTTTTGTTTTCTGTGTAATAAAAATCTTGTGGCTGTTATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGCTTCCTCCCCTTTGCAAGTGCCATCATCAACTACTCCTTTTGCTGGTCTTGTCATCTGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGATAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCGATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAGTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACACGCATTTGGAGGATTTTAGACTGCTTCCTGAGTATACAAATGCTGAAAATTCTTGTCTTCCTGCAAGAATCCTCCAAACCAAGCAAGCTATTAGTGTTGAAGAACTTCAAAGATTCACTGGGAGAGAGTCTATCAGAAATTTGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTTACCTCATTACACCTCTGTGGGTTCTCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCGCATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTGGAAGATATCCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCTGGATACTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAGTCGCCGTGGTCGCCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCGACTTCGGCTGCTTCCATTTATACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAACCATACTTCAATATTTTTTTATGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGGTTGTAATTAACTCCCCATGGCTTGTCTCACACCTTTTCCTTACGTAGTAAGATACAGCCAAATGATTGTTAGTCATCCAATCTTTTCTCGAATCTTTTGCAGTGAGAAATCCGAGTTGATATTTAAAAACCCTTTCCTTACCATACTATTCCCAATTGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCCATAATGGTTTTAGGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGGGAAGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCTAGTAAGGAAACAGCAGAACATGGCTATGTACTGTTTAAAAGGGTCGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACTCCTCCAACGTTTATGAGCTATTACTTAGGGCCTAAGGTAATTTTATTATACAAGGATTCCCCATATTGGTATGAATGGCCAAAAATGGGGAAATGTTTAGCTTGTCCCTAGAACAAATGAGAAAAAATGATTCATTAATATTTTAATATTATTTTTGTTATATTATTTAGAGGGAAGGGCAAAAGGTTATATGGTAAGAAGTTCGAAACTTGGACATCATTATCAACGCCAAACCCGGTCTTAAATATTTGAGTGATAAGGTCCTATAGAATGAATGTTTTGAATTATATTTTATACTCCGTTCATGTAAAGGTTTTTCTGCTTTGTGCATATAAATTAATGATAAATAGGATTATGATTTTA

Coding sequences of Glyma04g06071

Limit To All Plant Sequences

>Glyma04g06071.1   sequence type=CDS   gene model=Glyma04g06071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGCTTCCTCCCCTTTGCAAGTGCCATCATCAACTACTCCTTTTGCTGGTCTTGTCATCTGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGATAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCGATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAGTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACACGCATTTGGAGGATTTTAGACTGCTTCCTGAGTATACAAATGCTGAAAATTCTTGTCTTCCTGCAAGAATCCTCCAAACCAAGCAAGCTATTAGTGTTGAAGAACTTCAAAGATTCACTGGGAGAGAGTCTATCAGAAATTTGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTTACCTCATTACACCTCTGTGGGTTCTCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCGCATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTGGAAGATATCCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCTGGATACTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAGTCGCCGTGGTCGCCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCGACTTCGGCTGCTTCCATTTATACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAACCATACTTCAATATTTTTTTATGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTTAAAAACCCTTTCCTTACCATACTATTCCCAATTGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCCATAATGGTTTTAGGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGGGAAGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTCGATCAGTGTACTCTAGTAAGGAAACAGCAGAACATGGCTATGTACTGTTTAAAAGGGTCGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACTCCTCCAACGTTTATGAGCTATTACTTAGGGCCTAA

>Glyma04g06071.2   sequence type=CDS   gene model=Glyma04g06071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGCTTCCTCCCCTTTGCAAGTGCCATCATCAACTACTCCTTTTGCTGGTCTTGTCATCTGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGATAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCGATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAGTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACACGCATTTGGAGGATTTTAGACTGCTTCCTGAGTATACAAATGCTGAAAATTCTTGTCTTCCTGCAAGAATCCTCCAAACCAAGCAAGCTATTAGTGTTGAAGAACTTCAAAGATTCACTGGGAGAGAGTCTATCAGAAATTTGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTTACCTCATTACACCTCTGTGGGTTCTCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCGCATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATGCTGGAAGATATCCATAATGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCTGGATACTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAATTCTGCAAAAAATGGAGTCAGAAGTCGCCGTGGTCGCCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCGACTTCGGCTGCTTCCATTTATACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAACCATACTTCAATATTTTTTTATGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGGTTGTAA

Predicted protein sequences of Glyma04g06071

Limit To All Plant Sequences

>Glyma04g06071.1   sequence type=predicted peptide   gene model=Glyma04g06071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPASSPLQVPSSTTPFAGLVICVTGLSKEARNQVMEATDRLGGQYSPNLHPRCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKSVRLSESHYRVKSYGDNNTHLEDFRLLPEYTNAENSCLPARILQTKQAISVEELQRFTGRESIRNLDSTLSGCSIYVDPGISSELRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSYLITPLWVLKTAKEKYVRRLVRMSVDLAKQVGLMLEDIHNGISGKEVIKQKVLNNLLDTESEVGYEERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISESTSAASIYTDSFSVEDPSENHTSIFFYAKGDGKDSEASFSNSTRPLTESEKSELIFKNPFLTILFPIDRFAEMGPSSRTFFSHNGFRCLQVLDHIHAFYQENMSREEIEAAIHSDSRHADRLRSVYSSKETAEHGYVLFKRVEFLGSRTSFEMLKRVTGDNSSNVYELLLRA*

>Glyma04g06071.2   sequence type=predicted peptide   gene model=Glyma04g06071   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPASSPLQVPSSTTPFAGLVICVTGLSKEARNQVMEATDRLGGQYSPNLHPRCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKSVRLSESHYRVKSYGDNNTHLEDFRLLPEYTNAENSCLPARILQTKQAISVEELQRFTGRESIRNLDSTLSGCSIYVDPGISSELRNKVIETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSYLITPLWVLKTAKEKYVRRLVRMSVDLAKQVGLMLEDIHNGISGKEVIKQKVLNNLLDTESEVGYEERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISESTSAASIYTDSFSVEDPSENHTSIFFYAKGDGKDSEASFSNSTRPLTERL*

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