Glyma04g06020 - SoyBase

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Report for Sequence Feature Glyma04g06020

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4591206
stop:	4594525
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33170	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15995701-15998673 REVERSE LENGTH=990	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF65	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7J944	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J944_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339E9A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339E9A related cluster n=1 Tax=unknown RepID=UPI0002339E9A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06020

Paralog	Evidence	Comments
Glyma06g06050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g057300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06020

Limit To All Plant Sequences

>Glyma04g06020.2   sequence type=CDS   gene model=Glyma04g06020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACTTGCGACTTCGAGCTGCCACTTCCACTGCAAACCCATTGACCCCACGCGCTCACCTCATCCACTCTCTCCCTCAATGCTTCTCCATCCTCCGCCAGGCCATCGCCGCCTCCGACTTATCCCTCGGAAAGCGCGCCCACGCCCGCATCCTCACGTCCGGCCACCACCCCGACCGCTTCGTCACCAACAACCTCATCACCATGTATGCCAAATGCGGCTCCCTTTCCTCCGCGCGCAAACTGTTCGATACAACGCCCGACACCAACCGTGACCTCGTTACCTGGAACGCCATCCTCTCCGCCCTCGCCGCCCACGCTGACAAATCCCACGACGGCTTCCACCTCTTCCGTCTCCTCCGTCGCTCCGTTGTCTCCACCACGCGCCACACTCTCGCCCCCGTCTTCAAAATGTGCCTCCTCTCAGCTTCCCCCTCCGCCTCCGAGTCCCTCCACGGTTACGCCGTCAAGATCGGATTACAATGGGACGTGTTCGTCGCCGGTGCTCTGGTCAACATATATGCCAAATTTGGACTAATCAGAGAGGCACGCGTTCTGTTCGACGGAATGGCTGTGAGAGACGTTGTTCTCTGGAACGTCATGATGAAGGCTTACGTCGACACATGTCTCGAATACGAAGCGATGCTTCTCTTCTCTGAGTTTCATCGAACTGGATTCCGTCCCGATGACGTCACTCTCCGCACTCTCTCGCGGGTTGTTAAATGTAAGAAAAACATTTTGGAATTGAAGCAGTTTAAAGCTTATGCGACGAAGTTGTTTATGTATGATGATGATGGTTCAGATGTTATTGTGTGGAACAAGGCACTGTCTCGGTTTCTTCAGAGAGGTGAAGCTTGGGAAGCTGTTGATTGTTTTGTGGATATGATAAACTCACGTGTTGCGTGTGATGGCTTGACTTTTGTTGTGATGTTGACTGTGGTTGCCGGTTTGAACTGTCTTGAACTGGGGAAACAGATTCACGGCATTGTCATGAGGTCCGGGTTGGATCAAGTTGTCTCTGTTGGGAATTGCCTTATCAATATGTATGTTAAGGCTGGTTCTGTTTCTCGTGCGAGGTCGGTGTTTGGTCAAATGAATGAAGTGGATTTGATATCGTGGAACACCATGATATCTGGTTGCACGCTGAGTGGTTTGGAGGAGTGTTCTGTTGGGATGTTTGTTCATTTATTACGCGACAGTTTATTGCCAGATCAATTCACTGTTGCAAGCGTTTTGAGGGCTTGTTCGTCTCTTGAAGGAGGTTACTATCTTGCCACACAGATTCATGCTTGTGCAATGAAAGCTGGTGTCGTCTTGGATTCGTTTGTTTCAACTGCTCTGATTGATGTCTATTCCAAGCGTGGGAAGATGGAGGAAGCGGAATTTCTTTTTGTTAACCAAGATGGATTTGATTTGGCTTCGTGGAATGCTATAATGCATGGATACATTGTGAGTGGTGATTTTCCTAAGGCATTGAGGCTTTACATTTTAATGCAAGAAAGTGGAGAGAGATCGGATCAGATTACTCTGGTGAATGCAGCTAAAGCTGCTGGGGGATTGGTGGGGCTTAAACAAGGGAAGCAAATTCACGCTGTTGTTGTGAAAAGGGGTTTTAATTTAGATTTGTTTGTCACTAGTGGTGTTCTTGACATGTATCTAAAATGTGGAGAGATGGAAAGTGCACGCAGAGTTTTCAGTGAAATACCCTCACCTGATGATGTTGCTTGGACTACTATGATATCAGGATGTGTGGAGAATGGACAAGAGGAACATGCTCTTTTCACGTACCATCAGATGAGACTTTCCAAGGTGCAGCCTGATGAGTATACCTTTGCTACCCTTGTCAAGGCTTGCTCTCTTTTAACGGCATTGGAACAAGGGAGACAAATTCATGCAAATATTGTAAAGCTAAACTGTGCTTTTGATCCTTTTGTAATGACCTCACTTGTTGACATGTATGCTAAGTGTGGAAATATAGAAGATGCGCGTGGTTTATTTAAAAGAACGAACACGAGGAGGATTGCCTCATGGAATGCCATGATAGTAGGATTAGCTCAACATGGAAATGCCAAGGAAGCCCTTCAGTTTTTCAAATATATGAAATCTAGGGGTGTAATGCCAGATAGAGTTACTTTTATAGGGGTTCTTTCTGCGTGCAGTCACTCTGGTTTGGTATCTGAAGCCTATGAGAATTTTTATTCCATGCAGAAAAACTATGGTATTGAACCTGAGATTGAGCACTATTCTTGTCTAGTTGATGCCCTTAGCCGTGCAGGGCGGATAGAAGAAGCTGAAAAGGTGATATCATCAATGCCTTTTGAAGCTTCTGCTTCAATGTATAGAACATTGCTTAATGCTTGTAGGGTTCAGGTTGACAGAGAGACAGGAAAGCGTGTAGCAGAAAAGCTTTTGGCCTTGGAGCCATCTGATTCAGCTGCTTATGTTCTTTTATCCAATGTTTATGCGGCTGCTAACCAATGGGAAAATGTGGCGAGTGCTAGAAATATGATGAGAAAAGTAAATGTGAAGAAGGATCCTGGGTTTAGTTGGGTAGATTTGAAGAACAAGGTGCATTTGTTTGTAGCCGGTGATAGGTCGCATGAAGAAACTGATGTGATATATAATAAGGTGGAGTATATTATGAAGAGGATCAGAGAAGAAGGCTATGTCCCTGACACAGACTTTGCACTTGTTGATGTAGAAGAAGAAGATAAAGAGTGTTCTTTATATTATCATAGTGAGAAGCTAGCAATAGCGTATGGGCTTATGAAAACTCCACCATCCACTACATTAAGGGTAATTAAAAACCTCAGAGTGTGTGGAGATTGCCATAGTGCAATCAAATATATATCAAAGGTTTTTAAGCGAGAGATTGTTTTGAGAGATGCAAATCGATTTCATCATTTCAGGAATGGGATTTGCTCTTGTGGTGATTACTGGTGA

Predicted protein sequences of Glyma04g06020

Limit To All Plant Sequences

>Glyma04g06020.2   sequence type=predicted peptide   gene model=Glyma04g06020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLRLRAATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW*

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