Glyma04g06010 - SoyBase

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Report for Sequence Feature Glyma04g06010

Feature Type:	gene_model
Chromosome:	Gm04
Start:	4582640
stop:	4588066
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g06010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26280	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 7 \| chr2:11188143-11190579 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0006298	GO-bp	Annotation by Michelle Graham. GO Biological Process: mismatch repair	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF01713	PFAM	Smr domain	JGI		ISS
PF08590	PFAM	Domain of unknown function (DUF1771)	JGI		ISS
UniRef100_B9RQZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JU29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JU29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g06010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g06010

Paralog	Evidence	Comments
Glyma06g06030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g06010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g057200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g06010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g06010

Limit To All Plant Sequences

>Glyma04g06010.1   sequence type=CDS   gene model=Glyma04g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAGATGAGTCTCGAGTTCTTGATGATCTTTCTTTAGCAGGCTTATCCATACATGATGACAATGAAGCCTCCAGGTTTCCTTCTTCTAAAGGAAGTAAATATATTATAAATGAGCAGGAGGAAATATCTCAACAGCATGTTAATGGCAATAGCTTGGCAGATAAACTAGGGTTTTCCAATTCAAGCTACAGGGAGGACCCATCTTCTGGAAGCTTTTTGAATGTTCTGGCAAAGCCTTGGGAGGGGCCAATTGGGAGTGCTGACCAGTGTATTAGCAGTGGTCAAGAGGGCCTTACTTATGATGACAACTCTATACATGGATACTTAAATGATGTTTTGGTTGAAAATGCAATTGTGGATGATACTGATCTGAATCCTTTGGAGTTTTTAGCTTCCCTGTTCCCTGGTTTTGCAGCAGAAAGCCTTGCGGAAGCTTACTTTGCTAATGGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGCTTCAAGTTGATGGCGGTTTCAATCAGAATCTGAATTCAAAGACTCTGTCAGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATGGCCAGACTGCTTCAGTAAAATATGTGGTTGATAATGTCCAACAAAGTGGCAATCCTTACCGATCATTTGACAGTGATGTGCTGCTTTTCAAATCTGGCTCTTCAGTTCCATCTGGGGGTGGTGCTATTGAATTTGCTTCAGCTGTTAGGAAGTTGGCTTCTCAGGATTCTGGTGGTATTTGGAAGTATGAAAAAAATGGCTCTGGTGATGCTGCTATCGGCTCAAGTAGGACTTCAAATGTTCTGGCTAGTGATTACAATGGTGGACAGGGGAGAGCACACTTTGTTGATCGGTTACAGAACGTTGGTTCAGCTCGGGCAGCTCCTGTTTGGCTTGAAACCAGTGATGCAGTTGCAAATATGTTTTCAGAGCTGCGGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAGGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGCTGCTCATGGAAAAGCTCAAGAATCCATTTACCGCCAGAGAAATCCAGTTGCTCCAGAGGTGCAGGGCAATGGAAGAGGAAATGAGAGGATAGTAGACCTACATGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCCGAGCAGCGTTTGCAGGTTTATATTCTTGTGGGGACAGGTCATCATACCAGGGGTTCTCGCACTCCTGCGAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCATGGAAACTCAGCCAGGCCTACTACGTGTTGTGATATATTGA

Predicted protein sequences of Glyma04g06010

Limit To All Plant Sequences

>Glyma04g06010.1   sequence type=predicted peptide   gene model=Glyma04g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEDESRVLDDLSLAGLSIHDDNEASRFPSSKGSKYIINEQEEISQQHVNGNSLADKLGFSNSSYREDPSSGSFLNVLAKPWEGPIGSADQCISSGQEGLTYDDNSIHGYLNDVLVENAIVDDTDLNPLEFLASLFPGFAAESLAEAYFANGCDLHLTTEMLNQLELQVDGGFNQNLNSKTLSAPNLSAMDYPALTSPDGQTASVKYVVDNVQQSGNPYRSFDSDVLLFKSGSSVPSGGGAIEFASAVRKLASQDSGGIWKYEKNGSGDAAIGSSRTSNVLASDYNGGQGRAHFVDRLQNVGSARAAPVWLETSDAVANMFSELREEARDHACLRNAYFEQAQQAYLIGDKALAKELSAKGQLHNMHMKAAHGKAQESIYRQRNPVAPEVQGNGRGNERIVDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFMETQPGLLRVVIY*

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